View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_31 (Length: 284)
Name: NF0686_low_31
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 22727122 - 22726936
Alignment:
| Q |
54 |
acatcatcacaagtttatttcaaattaccttgccacccttgaaactcctccagaattgaggcaagaagcttggaatctggctaatgataggtatgtaatt |
153 |
Q |
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| T |
22727122 |
acatcctcacaagtttatttcaaattaccttgccacccttgaaactcctccagaattgaggcaagaagcttggaatctggctaatgataggtatgtaatt |
22727023 |
T |
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| Q |
154 |
gtagatattgtgatttctatttttattatgctgattgtgtatattcacggcctgcactttgttccactacactatacataccctatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22727022 |
gtagatattgtgatttctatttttattatgctgattgtgtatattcacggcctgcactttgttccactacactatacataccctatg |
22726936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 2645445 - 2645553
Alignment:
| Q |
54 |
acatcatcacaagtttatttcaaattaccttgccacccttgaaactcctccagaattgaggcaagaagcttggaatctggctaatgataggtatgtaatt |
153 |
Q |
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||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
2645445 |
acatcctcacaagtttatttcgaattaccttgctacccttgaaacacctccagagttgagtcaagaagcttggaatctggctaacgataggtacataatt |
2645544 |
T |
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| Q |
154 |
gtagatatt |
162 |
Q |
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||||||||| |
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| T |
2645545 |
gtagatatt |
2645553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 2645778 - 2645855
Alignment:
| Q |
122 |
cttggaatctggctaatgataggtatgtaattgtagatattgtgatttctatttttattatgctgattgtgtatattc |
199 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| | ||| |||| ||||||| | ||||||||||||| |
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| T |
2645778 |
cttggaatctggctaacgataggtacataattgtagatattattattattattattattatcattattgtgtatattc |
2645855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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