View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_36 (Length: 274)
Name: NF0686_low_36
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 47456386 - 47456140
Alignment:
| Q |
1 |
ttaaaaagaggaatagttaaacaaaaggcattcgtacttataaagaaattgataattacccttgcataaaggctttgaggatctgttactgatcctctac |
100 |
Q |
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| T |
47456386 |
ttaaaaagaggaatagttaaacaaaaggcatttgtacttataaagaaattgataattacccttgcataaaggctttgaggatctgttgctgatcctctac |
47456287 |
T |
|
| Q |
101 |
tagctcttttctttccattggagttgagagacacagttgatttagatgctgcagaagctcctccactgctttccccacacatgttttgttcctctgaggt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
47456286 |
tagctcttttttttccattggagttgagagacacagttgatttagatgctgcagaagctcctccactgttttcctcacacatgttttgttcctctgaggt |
47456187 |
T |
|
| Q |
201 |
ataaccactagagttatgtccatctatacttgtattggcttcttctg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456186 |
ataaccactagagttatgtccatctatacttgtattggcttcttctg |
47456140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 5272587 - 5272664
Alignment:
| Q |
53 |
taattacccttgcataaaggctttgaggatctgttactgatcctctactagctcttttctttccattggagttgagag |
130 |
Q |
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|||||||||||||||| || ||||| ||||||||| | |||||||||||||||||| |||| ||||| |||||||||| |
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| T |
5272587 |
taattacccttgcatatagactttggggatctgttgcagatcctctactagctcttgtcttcccatttgagttgagag |
5272664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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