View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0686_low_42 (Length: 263)

Name: NF0686_low_42
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0686_low_42
NF0686_low_42
[»] chr6 (32 HSPs)
chr6 (16-223)||(29882821-29883028)
chr6 (16-223)||(29909977-29910184)
chr6 (16-223)||(29912358-29912565)
chr6 (16-223)||(29903623-29903830)
chr6 (16-224)||(29348005-29348211)
chr6 (16-223)||(29357391-29357592)
chr6 (19-223)||(29210808-29211003)
chr6 (85-220)||(29867154-29867287)
chr6 (16-76)||(29074149-29074209)
chr6 (16-76)||(29078913-29078973)
chr6 (16-76)||(29106722-29106782)
chr6 (16-76)||(29116647-29116707)
chr6 (16-67)||(29914378-29914429)
chr6 (16-58)||(29099729-29099771)
chr6 (150-220)||(29895117-29895187)
chr6 (16-57)||(24731241-24731282)
chr6 (16-69)||(29930454-29930507)
chr6 (16-76)||(24886119-24886179)
chr6 (16-78)||(24263303-24263365)
chr6 (16-78)||(29867035-29867097)
chr6 (16-78)||(29898459-29898521)
chr6 (16-78)||(29929659-29929721)
chr6 (166-220)||(30126416-30126470)
chr6 (16-85)||(28926091-28926160)
chr6 (16-57)||(30999570-30999611)
chr6 (18-78)||(29085406-29085466)
chr6 (16-78)||(29365972-29366034)
chr6 (16-57)||(24889818-24889859)
chr6 (17-78)||(29887684-29887745)
chr6 (89-123)||(30126511-30126545)
chr6 (17-57)||(15714564-15714604)
chr6 (26-78)||(30029744-30029796)
[»] scaffold0237 (1 HSPs)
scaffold0237 (16-223)||(22729-22936)
[»] scaffold0054 (1 HSPs)
scaffold0054 (16-223)||(53047-53252)
[»] scaffold0573 (1 HSPs)
scaffold0573 (16-85)||(4523-4592)
[»] chr1 (1 HSPs)
chr1 (16-80)||(10130523-10130587)
[»] chr2 (1 HSPs)
chr2 (16-57)||(15062448-15062489)
[»] scaffold0086 (1 HSPs)
scaffold0086 (17-78)||(30869-30930)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-78)||(121031-121092)
[»] scaffold0654 (1 HSPs)
scaffold0654 (17-57)||(792-832)
[»] scaffold0652 (1 HSPs)
scaffold0652 (17-57)||(867-907)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 29882821 - 29883028
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  29882821 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaactatttgatagcatcatttcattttatgtac 29882920  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    ||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29882921 ttgcctctactggtggaaaagaaacatttttttattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 29883020  T
Q  216 tatatgat 223  Q
    ||||||||    
T  29883021 tatatgat 29883028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 29909977 - 29910184
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  29909977 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaactatttgatagcatcatttcattttatgtac 29910076  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    ||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29910077 ttgcctctactggtggaaaagaaacatttttttattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 29910176  T
Q  216 tatatgat 223  Q
    ||||||||    
T  29910177 tatatgat 29910184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 29912358 - 29912565
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  29912358 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaactatttgatagcatcatttcattttatgtac 29912457  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    |||||||||| |||| ||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29912458 ttgcctctacgggtggaaaagaaacatttttttattgtttttgttaactgtgtttaccaaaacctttatactttttgtatatcttccattttgatttctc 29912557  T
Q  216 tatatgat 223  Q
    ||||||||    
T  29912558 tatatgat 29912565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 29903623 - 29903830
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||||||    
T  29903623 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagactgaaactatttgatagcatcatttcattttatgtac 29903722  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
     |||||||||||||| ||||||||||       |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29903723 ctgcctctactggtggaaaagaaacatttttttattgtttttgttaattgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 29903822  T
Q  216 tatatgat 223  Q
    ||||||||    
T  29903823 tatatgat 29903830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 29348211 - 29348005
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||   |||| ||||||||||||||||| |||||||||||    
T  29348211 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgcgaggtctattgtaagactaaaactatttgatagcatcatttcattttatgtac 29348112  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    |||||||| || ||| |||||||||        |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||    
T  29348111 ttgcctctgctagtggaaaagaaac--ttttttattgtttttgttaactgtgtttacaaaaacctttatgcttcttgtgtatcttccatttcgatttctc 29348014  T
Q  216 tatatgatg 224  Q
    |||||||||    
T  29348013 tatatgatg 29348005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 29357592 - 29357391
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||| |||||||||||||||||| |||||||||||    ||||||||||||||||| ||||| |||  |||||||||||| |||||||||||    
T  29357592 agatgaaaatgagatggcagagaaacttctttgtgaaatgatc----gaggtctattgtaagattgaaactattcaatagcatcatttcattttatgtac 29357497  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    |||||||| || ||| |||||  | |       |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  29357496 ttgcctctgctagtggaaaag--atatttttttattgtttttgttaactgtgtttaccaaaacttttatacttctcgtatatcttccatttcgatttctc 29357399  T
Q  216 tatatgat 223  Q
    ||||||||    
T  29357398 tatatgat 29357391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 29211003 - 29210808
Alignment:
Q  19 tgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtacttg 118  Q
    |||||||||||||||||||||||||| ||||||        |||||| |||| |||||||  ||||| |||||||| |||||||| ||||||||||||||    
T  29211003 tgaaaatgatatggcagagaaacttcatcgtgag-------tgcgagatctaatgtaagactgaaactatttgataacatcatttcattttatgtacttg 29210911  T
Q  119 cctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctctat 218  Q
    ||||| || ||| |||| ||||        |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  29210910 cctctgctagtggaaaataaac--ttttttattgtttttgtttactgtgtttaccaaaacctttatacttctcgtatatcttccatttcgatttctctat 29210813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 29867154 - 29867287
Alignment:
Q  85 caatttgatagcatcattttattttatgtacttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttat 184  Q
    |||||||||| |||||||| |||||||||||||| |||| || ||| ||||||  ||       |||||||||||||||||||| || ||||||||||||    
T  29867154 caatttgatatcatcatttcattttatgtacttgtctctgctagtggaaaaga--cacttttttattgtttttgttaactgtgtatagcaaaacctttat 29867251  T
Q  185 acttcttgtatatcttccattttgatttctctatat 220  Q
    |||||| |||||| ||||||||   |||||||||||    
T  29867252 acttctcgtatatattccatttcagtttctctatat 29867287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 29074149 - 29074209
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  29074149 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaa 29074209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 29078913 - 29078973
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  29078913 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaa 29078973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 29106722 - 29106782
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  29106722 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaa 29106782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 29116647 - 29116707
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||||    
T  29116647 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcgcgagaggtctactgtaa 29116707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 29914378 - 29914429
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  29914378 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcttgagaggt 29914429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 29099729 - 29099771
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatc 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29099729 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatc 29099771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 29895117 - 29895187
Alignment:
Q  150 ttgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctctatat 220  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||   |||||||||||    
T  29895117 ttgtttttgttaactgtgtatagcaaaacctttatacttctcgtatatattccatttcagtttctctatat 29895187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 24731241 - 24731282
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24731241 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 24731282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29930454 - 29930507
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtct 69  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || |||||||    
T  29930454 agatgaaaatgatatggcagagaaatttcttcgtgaaatgatcgtgagaggtct 29930507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 24886179 - 24886119
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaa 76  Q
    |||||||||||||||||||||||||||||| ||||||||||||  | |||||||| |||||    
T  24886179 agatgaaaatgatatggcagagaaacttctccgtgaaatgatcgcgagaggtctactgtaa 24886119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 24263365 - 24263303
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |   ||||||||||||||||    
T  24263365 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacaagaggtctattgtaaga 24263303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29867035 - 29867097
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||||||||||||| ||| ||||||||||||||||||||||| | | |||| |||||||||||    
T  29867035 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacgagaggcctattgtaaga 29867097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29898459 - 29898521
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| |||| ||||| |||||    
T  29898459 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattatgagaggcctattataaga 29898521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29929659 - 29929721
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||| ||||||||| ||||||||||||||||||||||||||| | | |||| |||||||||||    
T  29929659 agataaaaatgataaggcagagaaacttcttcgtgaaatgattacgagaggcctattgtaaga 29929721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 30126470 - 30126416
Alignment:
Q  166 tgtttaccaaaacctttatacttcttgtatatcttccattttgatttctctatat 220  Q
    |||| ||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  30126470 tgttaaccaaaaactatatacttctcgtatatcttccattttgatttctctatat 30126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 28926160 - 28926091
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaac 85  Q
    |||||||||||||| ||| ||||||||||||| ||||||||| | | |||| |||||||||||| |||||    
T  28926160 agatgaaaatgataaggcggagaaacttcttcttgaaatgattacgagagggctattgtaagattgaaac 28926091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 30999611 - 30999570
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  30999611 agatgaaaatgacatggcagagaaacttcttcgtgaaatgat 30999570  T

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Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 29085406 - 29085466
Alignment:
Q  18 atgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||||||||||| ||| ||||||||| ||||||||||||| | | ||||||||||||||||    
T  29085406 atgaaaatgataaggcggagaaactttttcgtgaaatgattacgagaggtctattgtaaga 29085466  T

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Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29366034 - 29365972
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    |||||||||||||| ||| ||||||||||||||||||||||| | | |||| ||||| |||||    
T  29366034 agatgaaaatgataaggcggagaaacttcttcgtgaaatgattacgagaggcctattttaaga 29365972  T

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Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 24889859 - 24889818
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  24889859 agatgaaaatgacacggcagagaaacttcttcgtgaaatgat 24889818  T

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Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 29887684 - 29887745
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    ||||||||||||| ||| ||||| ||||||||||||||||| | | |||| |||||||||||    
T  29887684 gatgaaaatgataaggcggagaatcttcttcgtgaaatgattacgagaggcctattgtaaga 29887745  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 30126545 - 30126511
Alignment:
Q  89 ttgatagcatcattttattttatgtacttgcctct 123  Q
    ||||||||||||||| |||||||||||||||||||    
T  30126545 ttgatagcatcatttcattttatgtacttgcctct 30126511  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 15714604 - 15714564
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  15714604 gatgagaatgataaggcagagaaacttctgcgtgaaatgat 15714564  T

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Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 30029744 - 30029796
Alignment:
Q  26 gatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    ||||||||||||||||||||| ||||||||||     ||||||||||||||||    
T  30029744 gatatggcagagaaacttctttgtgaaatgattgctagaggtctattgtaaga 30029796  T

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Target: scaffold0237 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 22729 - 22936
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  22729 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagattgaaactatttgatagcatcatttcattttatgtac 22828  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    |||||||||| |||| ||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22829 ttgcctctacgggtggaaaagaaacatttttttattgtttttgttaactgtgtttaccaaaacctttatactttttgtatatcttccattttgatttctc 22928  T
Q  216 tatatgat 223  Q
    ||||||||    
T  22929 tatatgat 22936  T

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Target: scaffold0054 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 53252 - 53047
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaacaatttgatagcatcattttattttatgtac 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||  ||||| |||||||| |||||||| |||||||||||    
T  53252 agatgaaaatgatatggcagagaaacttctttgtgaaatgatcgcgtgaggtctattgtaagactgaaactatttgataacatcatttcattttatgtac 53153  T
Q  116 ttgcctctactggtgaaaaagaaacannnnnnnattgtttttgttaactgtgtttaccaaaacctttatacttcttgtatatcttccattttgatttctc 215  Q
    |||||||| || ||| |||||||||        |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  53152 ttgcctctgctagtggaaaagaaac--ttttttattgtttttgttaactgtgtttacaaaaacctttattcttctcgtatatcttccattttgatttctc 53055  T
Q  216 tatatgat 223  Q
    ||||||||    
T  53054 tatatgat 53047  T

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Target: scaffold0573 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 4523 - 4592
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatcgaaac 85  Q
    |||||||||||||| ||| ||||||||||||| ||||||||| | | |||| |||||||||||| |||||    
T  4523 agatgaaaatgataaggcggagaaacttcttcttgaaatgattacgagagggctattgtaagattgaaac 4592  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 10130523 - 10130587
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaagatc 80  Q
    |||||||||||||||||| || |||||||||||||| ||||| | | |||| |||||||||||||    
T  10130523 agatgaaaatgatatggcggaaaaacttcttcgtgagatgattaggagaggcctattgtaagatc 10130587  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 15062489 - 15062448
Alignment:
Q  16 agatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  15062489 agatgaaaatgataaagcagagaaacttcttcgtgaaatgat 15062448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 30930 - 30869
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    ||||| ||||| | ||| |||||||||||||||||||||||  |  ||||||||||||||||    
T  30930 gatgagaatgaaaaggcggagaaacttcttcgtgaaatgattgttagaggtctattgtaaga 30869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 121092 - 121031
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgatcatgcgaggtctattgtaaga 78  Q
    ||||| ||||||| ||||||||||||||| ||||||||||| |   ||||||| ||||||||    
T  121092 gatgagaatgataaggcagagaaacttctacgtgaaatgattactagaggtctgttgtaaga 121031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 832 - 792
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  832 gatgagaatgatagggcagagaaacttctacgtgaaatgat 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 907 - 867
Alignment:
Q  17 gatgaaaatgatatggcagagaaacttcttcgtgaaatgat 57  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  907 gatgagaatgataaggcagagaaacttctacgtgaaatgat 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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