View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_43 (Length: 261)
Name: NF0686_low_43
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 54701939 - 54701707
Alignment:
| Q |
29 |
actgtggactcatttttcattgctttcaagtttccaagtgcctttgcaatagctttcttcatcttcttcctatatgacaagtattttccttccaccctca |
128 |
Q |
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| T |
54701939 |
actgtggactcatttttcattgctttcaagtttccaagtgcctctgcaatagctttcttcatcttcttcctatatgacaagtattttccttccaccctca |
54701840 |
T |
|
| Q |
129 |
actgtgattccactttccacagctctcctcctgagaataactgaccgtagttcatgcatgatatcctttgattgcaccatacaatctttaactagatcca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54701839 |
actgtgattccactttccacagctctcctcctgagaataactgaccttagttcatgcatgatatcctttgattgcaccatacaatctttaactagatcca |
54701740 |
T |
|
| Q |
229 |
tcaaatagttcatcaacttgtttctcgctgcct |
261 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54701739 |
tcaaatagttcatcaacttgtttctcgctgcct |
54701707 |
T |
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