View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0686_low_44 (Length: 260)

Name: NF0686_low_44
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0686_low_44
NF0686_low_44
[»] chr4 (6 HSPs)
chr4 (1-240)||(18040125-18040364)
chr4 (1-237)||(22707818-22708054)
chr4 (7-210)||(26217146-26217349)
chr4 (7-96)||(20556923-20557012)
chr4 (7-85)||(8660499-8660577)
chr4 (40-96)||(12509613-12509669)
[»] chr7 (12 HSPs)
chr7 (1-237)||(23882967-23883203)
chr7 (10-210)||(5206143-5206343)
chr7 (10-210)||(27437397-27437597)
chr7 (1-210)||(27973229-27973438)
chr7 (7-210)||(566125-566328)
chr7 (10-210)||(29025590-29025790)
chr7 (4-122)||(3428069-3428187)
chr7 (4-128)||(8814208-8814332)
chr7 (4-128)||(42634647-42634771)
chr7 (55-96)||(38413157-38413198)
chr7 (65-96)||(4944910-4944941)
chr7 (29-94)||(1957797-1957862)
[»] chr3 (17 HSPs)
chr3 (1-237)||(8808184-8808420)
chr3 (1-237)||(21611614-21611850)
chr3 (10-210)||(10719252-10719452)
chr3 (7-210)||(15681605-15681808)
chr3 (1-210)||(25266909-25267118)
chr3 (4-122)||(3680272-3680390)
chr3 (4-122)||(30016842-30016960)
chr3 (10-235)||(3241947-3242171)
chr3 (4-128)||(6198171-6198295)
chr3 (4-128)||(8620212-8620336)
chr3 (4-128)||(15533501-15533625)
chr3 (4-128)||(46396875-46396999)
chr3 (7-96)||(12476520-12476609)
chr3 (55-215)||(9551821-9551981)
chr3 (40-155)||(41001765-41001880)
chr3 (40-155)||(41010547-41010662)
chr3 (40-92)||(27884087-27884139)
[»] chr6 (15 HSPs)
chr6 (1-240)||(27513811-27514050)
chr6 (1-237)||(16821181-16821417)
chr6 (7-210)||(16637593-16637796)
chr6 (10-210)||(335501-335701)
chr6 (10-210)||(27055320-27055520)
chr6 (4-128)||(619532-619656)
chr6 (4-128)||(24147075-24147199)
chr6 (4-128)||(20044261-20044384)
chr6 (40-215)||(25503088-25503263)
chr6 (40-155)||(5007596-5007711)
chr6 (4-86)||(20456412-20456494)
chr6 (7-96)||(18912118-18912207)
chr6 (55-155)||(5989891-5989991)
chr6 (65-96)||(28306866-28306897)
chr6 (65-96)||(28355672-28355703)
[»] chr5 (16 HSPs)
chr5 (1-237)||(12391605-12391841)
chr5 (10-210)||(23639529-23639729)
chr5 (10-210)||(23833158-23833358)
chr5 (7-210)||(21992795-21992998)
chr5 (7-170)||(27230585-27230748)
chr5 (4-122)||(37581400-37581518)
chr5 (7-210)||(12177532-12177735)
chr5 (7-210)||(26086301-26086504)
chr5 (7-210)||(33841877-33842080)
chr5 (7-203)||(11810378-11810574)
chr5 (4-128)||(1801890-1802014)
chr5 (4-128)||(7258323-7258447)
chr5 (4-128)||(7790586-7790710)
chr5 (41-210)||(21864429-21864598)
chr5 (40-155)||(24961778-24961893)
chr5 (46-95)||(20380525-20380574)
[»] chr1 (6 HSPs)
chr1 (1-239)||(6201142-6201380)
chr1 (7-210)||(31555482-31555685)
chr1 (40-155)||(31543425-31543540)
chr1 (19-86)||(19371816-19371883)
chr1 (55-96)||(13467253-13467294)
chr1 (55-96)||(13472247-13472288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (4-236)||(191676-191908)
[»] scaffold0551 (1 HSPs)
scaffold0551 (16-240)||(9549-9773)
[»] chr2 (10 HSPs)
chr2 (10-210)||(16276885-16277085)
chr2 (10-210)||(21856543-21856743)
chr2 (1-210)||(3762981-3763190)
chr2 (55-203)||(21116447-21116596)
chr2 (40-155)||(35142089-35142204)
chr2 (55-155)||(24288600-24288700)
chr2 (40-155)||(15949630-15949745)
chr2 (65-155)||(20614202-20614292)
chr2 (46-95)||(30689904-30689953)
chr2 (7-50)||(24702014-24702057)
[»] scaffold0389 (2 HSPs)
scaffold0389 (10-210)||(3156-3356)
scaffold0389 (54-87)||(2799-2832)
[»] chr8 (5 HSPs)
chr8 (4-128)||(21479567-21479691)
chr8 (16-94)||(24706466-24706544)
chr8 (7-96)||(32002753-32002842)
chr8 (7-84)||(20736703-20736780)
chr8 (7-84)||(20745261-20745338)
[»] scaffold1197 (1 HSPs)
scaffold1197 (172-238)||(2392-2458)
[»] scaffold0202 (1 HSPs)
scaffold0202 (7-96)||(24761-24850)
[»] scaffold0357 (1 HSPs)
scaffold0357 (7-86)||(9342-9421)
[»] scaffold0132 (1 HSPs)
scaffold0132 (16-96)||(31876-31956)
[»] scaffold0016 (1 HSPs)
scaffold0016 (55-155)||(19124-19224)
[»] scaffold0044 (2 HSPs)
scaffold0044 (40-95)||(71083-71138)
scaffold0044 (41-87)||(71468-71514)
[»] scaffold0001 (1 HSPs)
scaffold0001 (7-96)||(99449-99538)
[»] scaffold0157 (1 HSPs)
scaffold0157 (40-96)||(10808-10864)
[»] scaffold0600 (1 HSPs)
scaffold0600 (17-84)||(8992-9059)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-96)||(152731-152786)
[»] scaffold0605 (1 HSPs)
scaffold0605 (58-96)||(5266-5304)
[»] scaffold0114 (1 HSPs)
scaffold0114 (7-77)||(31053-31123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-86)||(301987-302032)
[»] scaffold0002 (1 HSPs)
scaffold0002 (55-155)||(125221-125321)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18040364 - 18040125
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18040364 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 18040265  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18040264 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcatagg 18040165  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatgatgt 240  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  18040164 aatcagatcatactgcggtgttttctgagcctgatgatgt 18040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22708054 - 22707818
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22708054 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 22707955  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22707954 tccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcatagg 22707855  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  22707854 aatcggatcatactgcggtgttttctgagcctgatga 22707818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 26217146 - 26217349
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||| ||||||||||||||||||  |||||||||| ||| ||||||| |    
T  26217146 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgacattgtgccccttgatggaaaacacaaaagagatcaggtctccatc 26217245  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  26217246 gagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 26217345  T
Q  207 atca 210  Q
    ||||    
T  26217346 atca 26217349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 20557012 - 20556923
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| |||| ||| ||  | || |||||||||||||||||  ||||||||    
T  20557012 tcaatcaacttctggacttcaatcttcaaagagaaacagtgctcgacgtgatggccgggagctccttgatggaaggcacaggagaggtca 20556923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8660577 - 8660499
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcac 85  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | |||||| |   | || ||||||||||||||||    
T  8660577 tcaatcagcttctggacttcaatcttcaaagagaaacagtgctcgatgtcatggctgggagctccttgatggaaggcac 8660499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 12509613 - 12509669
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  12509613 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 12509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23882967 - 23883203
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23882967 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 23883066  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23883067 tccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcatagg 23883166  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  23883167 aatcggatcatactgcggtgttttctgagcctgatga 23883203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 5206143 - 5206343
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  5206143 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 5206242  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  5206243 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 5206342  T
Q  210 a 210  Q
    |    
T  5206343 a 5206343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 27437597 - 27437397
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  27437597 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 27437498  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  27437497 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 27437398  T
Q  210 a 210  Q
    |    
T  27437397 a 27437397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 27973229 - 27973438
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    ||||| |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| |||    
T  27973229 tcatcttcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtc 27973328  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||| | |||||||||| |||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||    
T  27973329 tccatcgagccggcaatatcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattgg 27973428  T
Q  201 aatcggatca 210  Q
    ||| ||||||    
T  27973429 aattggatca 27973438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 566125 - 566328
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  566125 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 566224  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  566225 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 566324  T
Q  207 atca 210  Q
    ||||    
T  566325 atca 566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 29025790 - 29025590
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||| ||||||||||||||||| || || |||||   |||||| ||||||||||||||||| ||||||||  |||||||||| ||| ||||||| | ||    
T  29025790 atcagcttctggacttcaatctttaaagaaaaacagcactcaacatcatgaccttgtgccccctgatggaaaacacaaaagagatcaggtctccatcgag 29025691  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||  ||  | |||| || |||| |||||||||| |||||||||||    
T  29025690 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaaataaatagggaaacaactccccatatttcattggaatcggatc 29025591  T
Q  210 a 210  Q
    |    
T  29025590 a 29025590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 3428069 - 3428187
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||    
T  3428069 tcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcaggtctcc 3428168  T
Q  104 acctagccggcaatttctt 122  Q
    |   |||| ||||||||||    
T  3428169 attgagccagcaatttctt 3428187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 8814332 - 8814208
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  8814332 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctcc 8814233  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  8814232 acctagtcggcaatttcttgggtat 8814208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 42634647 - 42634771
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  42634647 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 42634746  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  42634747 acctagtcggcaatttcttgggtat 42634771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 38413198 - 38413157
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  38413198 tcatgacctggtgccccttgatggaaggcacaagagaggtca 38413157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 4944910 - 4944941
Alignment:
Q  65 gtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||||||||||||||||||||||||||    
T  4944910 gtgccccttgatggaaggcacaaaagaggtca 4944941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 1957862 - 1957797
Alignment:
Q  29 tcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 94  Q
    ||||||| || ||||| |||||||  || |||| |  |||||||||||||||||||||||||||||    
T  1957862 tcttcaaagaaaaacagtgctcaatatcgtgacatgatgccccttgatggaaggcacaaaagaggt 1957797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8808420 - 8808184
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8808420 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 8808321  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8808320 tccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcatagg 8808221  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  8808220 aatcggatcatactgcggtgttttctgagcctgatga 8808184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 21611850 - 21611614
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21611850 tcatcgtcaaccagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 21611751  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21611750 tccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcatagg 21611651  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  21611650 aatcggatcatactgcggtgttttctgagcctgatga 21611614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 10719252 - 10719452
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  10719252 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 10719351  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || || | |||||||||| |||||||||||    
T  10719352 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactacccatatttcattggaatcggatc 10719451  T
Q  210 a 210  Q
    |    
T  10719452 a 10719452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 15681605 - 15681808
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| |||||||||||||||||||||| |||  |||||||||| ||| ||||||| |    
T  15681605 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatagaaaacacaaaagagatcaggtctccatc 15681704  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||| ||| ||  |||||||| || ||||||||    
T  15681705 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaggcaactttgcatatttaattggaatcgg 15681804  T
Q  207 atca 210  Q
    ||||    
T  15681805 atca 15681808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 25267118 - 25266909
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    ||||| |||||||||||||| ||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| |||    
T  25267118 tcatcttcaatcagtttctgaaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtc 25267019  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||| | |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||    
T  25267018 tccatcgagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattgg 25266919  T
Q  201 aatcggatca 210  Q
    ||| ||||||    
T  25266918 aattggatca 25266909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 3680390 - 3680272
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||  |||||    
T  3680390 tcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgactttgtgctccttgatggaaagcacaacagaggtcagttctcc 3680291  T
Q  104 acctagccggcaatttctt 122  Q
    |   |||| ||||||||||    
T  3680290 attgagccagcaatttctt 3680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 30016960 - 30016842
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| |||||||| ||||||    
T  30016960 tcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcaggtctcc 30016861  T
Q  104 acctagccggcaatttctt 122  Q
    |   |||| ||||||||||    
T  30016860 attgagccagcaatttctt 30016842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 3241947 - 3242171
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||| ||||| ||||||||  | || || |||||||||| ||||||| ||||  |||||||||||||| || |||||||  ||||| ||| ||    
T  3241947 atcagtttctgaacttcgatcttcaaaaa-aagcagtgctcaacgtaatgacctggtgctgcttgatggaaggcataagagaggtcgggtctctaccgag 3242045  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    | | |||||| ||||| | ||| ||| || |||||||||||||||||||  | ||||||||  | ||||||| ||| ||||||||||||||||||  |||    
T  3242046 ctgacaattttttaggcaccggaggacgttgtctggtctggacaaggttcttctcaagcaaatagggaagcaactctgcatatttcataggaatcaaatc 3242145  T
Q  210 atactgcggtgttttctgagcctgat 235  Q
    |||||| | || ||||||||||||||    
T  3242146 atactgtgatgctttctgagcctgat 3242171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 6198295 - 6198171
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  6198295 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 6198196  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  6198195 acctagtcggcaatttcttgggtat 6198171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 8620336 - 8620212
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  8620336 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 8620237  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  8620236 acctagtcggcaatttcttgggtat 8620212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 15533501 - 15533625
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  15533501 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 15533600  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  15533601 acctagtcggcaatttcttgggtat 15533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 46396875 - 46396999
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| ||||| |||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  46396875 tcgtcgatcagcttctgaacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 46396974  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  46396975 acctagtcggcaatttcttgggtat 46396999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 12476520 - 12476609
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||| ||||||  |  |||| ||| |||||||||||||  ||||||||    
T  12476520 tcaatcagcttctggacttcagtcttcaaagagaaacaatgctcaatgtcatggtcgggtgctcctcgatggaaggcacaggagaggtca 12476609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 9551821 - 9551981
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 154  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| || ||||||||||||||  | ||||||||||||||||||||||    
T  9551821 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggaaatttcttaggtatacgaggaggtggtctggtctggacaa 9551920  T
Q  155 ggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 215  Q
    | || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  9551921 gcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 9551981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 41001880 - 41001765
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41001880 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41001781  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  41001780 gtctggtctggacaag 41001765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 41010662 - 41010547
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41010662 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41010563  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  41010562 gtctggtctggacaag 41010547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 27884139 - 27884087
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagag 92  Q
    ||||| |||||||  ||||||||| ||| ||||||||||||||||||| ||||    
T  27884139 aaacagtgctcaatatcatgacctggtgtcccttgatggaaggcacaatagag 27884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27514050 - 27513811
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27514050 tcattgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 27513951  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27513950 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcatagg 27513851  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatgatgt 240  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27513850 aatcagatcatactgcggtgttttctgagcctgatgatgt 27513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 16821181 - 16821417
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16821181 tcatcgtcaatcagtttctggacctcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 16821280  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16821281 tccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcatagg 16821380  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  16821381 aatcggatcatactgcggtgttttctgagcctgatga 16821417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 16637796 - 16637593
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  16637796 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 16637697  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  16637696 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 16637597  T
Q  207 atca 210  Q
    ||||    
T  16637596 atca 16637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 335501 - 335701
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||| ||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  335501 atcagcttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 335600  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||| | || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  335601 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggatcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 335700  T
Q  210 a 210  Q
    |    
T  335701 a 335701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 27055320 - 27055520
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    |||||||||||||||| |||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  27055320 atcagtttctggacttaaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 27055419  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || ||| |||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  27055420 ccggcaatttcttcggtattggaggaggtggcctagtccggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 27055519  T
Q  210 a 210  Q
    |    
T  27055520 a 27055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 619532 - 619656
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  619532 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctcc 619631  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  619632 acctagtcggcaatttcttgggtat 619656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 24147075 - 24147199
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  24147075 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 24147174  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  24147175 acctagtcggcaatttcttgggtat 24147199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 20044261 - 20044384
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  20044261 tcgtcgatcagcttctggacttcaatttcctaggagaaaca-tgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 20044359  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  20044360 acctagtcggcaatttcttgggtat 20044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 25503088 - 25503263
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| |||||||||||||||||  | |||||||    
T  25503088 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggcaatttcttaggtatacgaggaggtg 25503187  T
Q  140 gtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 215  Q
    |||||||||||||||| || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  25503188 gtctggtctggacaagcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 25503263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 5007711 - 5007596
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  5007711 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 5007612  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  5007611 gtctggtctggacaag 5007596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 20456412 - 20456494
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 86  Q
    ||||| ||||| || ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  20456412 tcgtcgatcagcttttggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 20456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 18912207 - 18912118
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||| |||||||||||| ||||||| |||||||  ||||| | |||||| ||| |||| ||||||||||||| |||  ||||||||    
T  18912207 tcaatcagcttctggacttcagtcttcaaagagaaacggtgctcgatgtcatggcctggtgctccttgatggaaggaacatgagaggtca 18912118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 5989991 - 5989891
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 154  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    ||||||||||||||||||||||    
T  5989991 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaa 5989892  T
Q  155 g 155  Q
    |    
T  5989891 g 5989891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 28306897 - 28306866
Alignment:
Q  65 gtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||||||||||||||||||||||||||    
T  28306897 gtgccccttgatggaaggcacaaaagaggtca 28306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 28355703 - 28355672
Alignment:
Q  65 gtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||||||||||||||||||||||||||    
T  28355703 gtgccccttgatggaaggcacaaaagaggtca 28355672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12391605 - 12391841
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12391605 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaggtc 12391704  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12391705 tccacctaggcggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcatagg 12391804  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  12391805 aatcggatcatactgcggtgttttctgagcctgatga 12391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 23639729 - 23639529
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  23639729 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 23639630  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  23639629 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 23639530  T
Q  210 a 210  Q
    |    
T  23639529 a 23639529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 23833158 - 23833358
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  23833158 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 23833257  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  23833258 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 23833357  T
Q  210 a 210  Q
    |    
T  23833358 a 23833358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 21992795 - 21992998
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  21992795 tcaatcagtttctggaccccaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 21992894  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     ||||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||||||    
T  21992895 gagccggcaatttcttcggtatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcgg 21992994  T
Q  207 atca 210  Q
    ||||    
T  21992995 atca 21992998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 27230585 - 27230748
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  27230585 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 27230684  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaa 170  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||    
T  27230685 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaa 27230748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 37581518 - 37581400
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  37581518 tcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgaccttgtgctccttgatggaaagcacaaaagaggtcaggtctcc 37581419  T
Q  104 acctagccggcaatttctt 122  Q
    |   |||||||||||||||    
T  37581418 attgagccggcaatttctt 37581400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 12177532 - 12177735
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  12177532 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 12177631  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  12177632 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 12177731  T
Q  207 atca 210  Q
    ||||    
T  12177732 atca 12177735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 26086301 - 26086504
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  26086301 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 26086400  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  26086401 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 26086500  T
Q  207 atca 210  Q
    ||||    
T  26086501 atca 26086504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 33841877 - 33842080
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  33841877 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 33841976  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  33841977 gagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 33842076  T
Q  207 atca 210  Q
    ||||    
T  33842077 atca 33842080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 11810378 - 11810574
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  11810378 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 11810477  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 203  Q
     |||||||||| | || |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |||||    
T  11810478 gagccggcaatattttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaat 11810574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 1802014 - 1801890
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  1802014 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 1801915  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  1801914 acctagtcggcaatttcttgggtat 1801890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 7258323 - 7258447
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  7258323 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 7258422  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  7258423 acctagtcggcaatttcttgggtat 7258447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 7790710 - 7790586
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  7790710 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 7790611  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  7790610 acctagtcggcaatttcttgggtat 7790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 21864429 - 21864598
Alignment:
Q  41 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtgg 140  Q
    ||||| |||||| |||||||||| ||||||||||||||||| ||||  |||| || | |||  |||  || |||||||||||||| || || ||||||||    
T  21864429 aacaacgctcaatgtcatgacctagtgccccttgatggaagacacatgagagatcgactctaaaccgtgcaggcaatttcttaggcattggaggaggtgg 21864528  T
Q  141 tctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 210  Q
    | | || ||||| ||||| || | ||||||   ||||| |||||||||||||||||| ||||| ||||||    
T  21864529 tttagtttggacgaggttcctcttaagcaaatcaggaaacagctccgcatatttcattggaattggatca 21864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 24961778 - 24961893
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  24961778 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 24961877  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  24961878 gtctggtctggacaag 24961893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 20380574 - 20380525
Alignment:
Q  46 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 95  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  20380574 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 20380525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6201142 - 6201380
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||    
T  6201142 tcatcgtcaatcaatttctggatttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgcgccccttgatggaagacacaaaagaggtcaggtc 6201241  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6201242 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcatagg 6201341  T
Q  201 aatcggatcatactgcggtgttttctgagcctgatgatg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6201342 aatcggatcatactgcggtgttttctgagcctgatgatg 6201380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 31555685 - 31555482
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 106  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  31555685 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 31555586  T
Q  107 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 206  Q
     ||||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||    
T  31555585 gagccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcgg 31555486  T
Q  207 atca 210  Q
    ||||    
T  31555485 atca 31555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 31543540 - 31543425
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  31543540 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 31543441  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  31543440 gtctggtctggacaag 31543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19371883 - 19371816
Alignment:
Q  19 tggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 86  Q
    ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  19371883 tggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 19371816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 13467294 - 13467253
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  13467294 tcatgacctggtgccccttgatggaaggcacaagagaggtca 13467253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 13472288 - 13472247
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  13472288 tcatgacctggtgccccttgatggaaggcataagagaggtca 13472247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 191676 - 191908
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  191676 tcgtcgatcagcttctggacttcaatcttcaaggagaaacagtgctcaacgtcatgaccttgtgcccctcgatggaaggtacaaaagaggtcaggtctcc 191775  T
Q  104 acctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||    
T  191776 acctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagtaggaagcagctccgcatatttcataggaat 191875  T
Q  204 cggatcatactgcggtgttttctgagcctgatg 236  Q
    |||||||||||||||||||||||||||||||||    
T  191876 cggatcatactgcggtgttttctgagcctgatg 191908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 9549 - 9773
Alignment:
Q  16 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||    
T  9549 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatgaaaggtacaatagaggtcaggtctccacctagccggca 9648  T
Q  116 atttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||    
T  9649 atttcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagaaggaagcagctccgcatatttcataggaatcagatcatattg 9748  T
Q  216 cggtgttttctgagcctgatgatgt 240  Q
     ||||||||||||||||||||||||    
T  9749 tggtgttttctgagcctgatgatgt 9773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 16277085 - 16276885
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  16277085 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 16276986  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  16276985 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 16276886  T
Q  210 a 210  Q
    |    
T  16276885 a 16276885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 21856543 - 21856743
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  21856543 atcagtttctggaccccaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 21856642  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    ||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |||||||||||    
T  21856643 ccggcaatttcttcggtatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcggatc 21856742  T
Q  210 a 210  Q
    |    
T  21856743 a 21856743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3762981 - 3763190
Alignment:
Q  1 tcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtc 100  Q
    ||||| |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| |||    
T  3762981 tcatcttcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtc 3763080  T
Q  101 tccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatagg 200  Q
    |||| | |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||    
T  3763081 tccatcgagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattgg 3763180  T
Q  201 aatcggatca 210  Q
    ||| ||||||    
T  3763181 aattggatca 3763190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 21116596 - 21116447
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggc-aatttcttaggtatcggcggaggtggtctggtctggaca 153  Q
    |||||| || |||||||||||||||||||||||||||||||  | ||  ||| ||| ||| ||||||||||||| | |   |||||||||||||||||||    
T  21116596 tcatgatctggtgccccttgatggaaggcacaaaagaggtcgggcctatacccagctggcaaatttcttaggtacccgataaggtggtctggtctggaca 21116497  T
Q  154 aggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 203  Q
    |||||  | | ||||||    ||||||||||| |||||||| || |||||    
T  21116496 aggttcttcttaagcaaaccgggaagcagctctgcatattttatgggaat 21116447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 35142204 - 35142089
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  35142204 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 35142105  T
Q  140 gtctggtctggacaag 155  Q
    ||||||||||||||||    
T  35142104 gtctggtctggacaag 35142089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 24288700 - 24288600
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 154  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  24288700 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggaagtggtctggtctggacaa 24288601  T
Q  155 g 155  Q
    |    
T  24288600 g 24288600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 15949630 - 15949745
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 139  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  15949630 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 15949729  T
Q  140 gtctggtctggacaag 155  Q
    |||| |||||||||||    
T  15949730 gtcttgtctggacaag 15949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 20614292 - 20614202
Alignment:
Q  65 gtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaag 155  Q
    ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||||||||||||||||||    
T  20614292 gtgccccttgatggaagacacaatagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaag 20614202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 30689904 - 30689953
Alignment:
Q  46 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 95  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  30689904 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 30689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 24702057 - 24702014
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctc 50  Q
    |||||||| |||||||||||||||||||| |||||||| |||||    
T  24702057 tcaatcagcttctggacttcaatcttcaaagagaaacagtgctc 24702014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 3356 - 3156
Alignment:
Q  10 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 109  Q
    ||||| || ||||| ||||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  3356 atcagcttttggacctcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 3257  T
Q  110 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 209  Q
    |||||||||||||  ||||||| |||||||| || || ||||||||||| || ||||| ||  | ||||||||||  ||||||||||| ||||| |||||    
T  3256 ccggcaatttcttttgtatcggaggaggtggcctagtttggacaaggttcctctcaagaaaatagggaagcagctttgcatatttcattggaattggatc 3157  T
Q  210 a 210  Q
    |    
T  3156 a 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 2832 - 2799
Alignment:
Q  54 gtcatgaccttgtgccccttgatggaaggcacaa 87  Q
    |||||||||| |||||||||||||||||||||||    
T  2832 gtcatgacctggtgccccttgatggaaggcacaa 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 21479567 - 21479691
Alignment:
Q  4 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 103  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  21479567 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 21479666  T
Q  104 acctagccggcaatttcttaggtat 128  Q
    |||||| |||||||||||| |||||    
T  21479667 acctagtcggcaatttcttgggtat 21479691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 24706466 - 24706544
Alignment:
Q  16 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 94  Q
    ||||||||||  |||||||| |||||||| |||||||||||||||  | ||||||||| ||||||||||||| ||||||    
T  24706466 ttctggactttgatcttcaaagagaaacagtgctcaacgtcatgagttggtgccccttcatggaaggcacaagagaggt 24706544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 32002842 - 32002753
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| ||||| || ||  | || |||||||||||||||||  ||||||||    
T  32002842 tcaatcaacttctggacttcaatcttcaaagagaaacagtgctcgacgtcgtggccgggagctccttgatggaaggcacaggagaggtca 32002753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 20736780 - 20736703
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 84  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||  | |||||| ||  |||| |||||||||||||||    
T  20736780 tcaataagcttctggacttcagtcttcaaagagaaacagtgcttgatgtcatggcccggtgctccttgatggaaggca 20736703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 20745338 - 20745261
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 84  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||  | |||||| ||  |||| |||||||||||||||    
T  20745338 tcaataagcttctggacttcagtcttcaaagagaaacagtgcttgatgtcatggcccggtgctccttgatggaaggca 20745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 2458 - 2392
Alignment:
Q  172 gaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgttttctgagcctgatgat 238  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  2458 gaaggaagcagctccgcatatttcataggaatcagatcatactgcggtgttttccgagcctgatgat 2392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24761 - 24850
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||| |||||||||||||||||||| |||||||| || || | |||||| ||  |||| |||||||||||||||||  ||||||||    
T  24761 tcaatcagcttctggacttcaatcttcaaagagaaacagtgttcgatgtcatggccgggtgctccttgatggaaggcacatgagaggtca 24850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 9421 - 9342
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 86  Q
    |||||||| |||||||||||||| ||||| |||||||||||||| | |||||| ||  | || |||||||||||||||||    
T  9421 tcaatcagcttctggacttcaattttcaaagagaaacaatgctcgatgtcatggccgggagctccttgatggaaggcaca 9342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 31956 - 31876
Alignment:
Q  16 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||||||||||||||| |||||||| ||||| | |||||| ||  | || |||||||||||||||||  ||||||||    
T  31956 ttctggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggagctccttgatggaaggcacaggagaggtca 31876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 19224 - 19124
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 154  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  19224 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggatgtggtctggtctggacaa 19125  T
Q  155 g 155  Q
    |    
T  19124 g 19124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 71083 - 71138
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 95  Q
    ||||| |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  71083 aaacagtgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 71138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 71468 - 71514
Alignment:
Q  41 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaa 87  Q
    |||| ||||||  |||||||||| |||||||||||||||||||||||    
T  71468 aacactgctcagtgtcatgacctggtgccccttgatggaaggcacaa 71514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 99538 - 99449
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| || || || ||  | || |||||||||||||||||  ||||||||    
T  99538 tcaatcaacttctggacttcaatcttcaatgagaaacagtgctcgacatcgtggccgggagctccttgatggaaggcacaggagaggtca 99449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 10864 - 10808
Alignment:
Q  40 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  10864 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 10808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9059 - 8992
Alignment:
Q  17 tctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 84  Q
    ||||||||||||||||||| |||||| | ||||||||||||||  |  | || |||||||||||||||    
T  9059 tctggacttcaatcttcaaagagaaatagtgctcaacgtcatggtcgggagctccttgatggaaggca 8992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 152786 - 152731
Alignment:
Q  41 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||| ||||| | |||||| ||| |||||||||||||||||||||||||| |||||    
T  152786 aacagtgctcgatgtcatgtcctagtgccccttgatggaaggcacaaaagcggtca 152731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 5266 - 5304
Alignment:
Q  58 tgaccttgtgccccttgatggaaggcacaaaagaggtca 96  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  5266 tgacctggtgccccttgatggaaggcacaagagaggtca 5304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 31053 - 31123
Alignment:
Q  7 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatg 77  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| ||||||||    
T  31053 tcaatcagcttatggacttcaatcttcaaagagaaacattgctcgatgtcatggccaggtgctccttgatg 31123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 302032 - 301987
Alignment:
Q  41 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 86  Q
    |||||||||||| |||||| ||  ||||||||||||||||||||||    
T  302032 aacaatgctcaatgtcatggccgggtgccccttgatggaaggcaca 301987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 125321 - 125221
Alignment:
Q  55 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 154  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| | |||||||||||| ||    ||| ||||||||||||||||||    
T  125321 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctgacaatttcttaggcatacaaggacgtggtctggtctggacaa 125222  T
Q  155 g 155  Q
    |    
T  125221 g 125221  T

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