View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_52 (Length: 235)
Name: NF0686_low_52
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 5159355 - 5159303
Alignment:
| Q |
137 |
aagtctaaaattcttggagaatcctagatgacaaattggtatgggaatatgat |
189 |
Q |
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| T |
5159355 |
aagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgat |
5159303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 5181576 - 5181531
Alignment:
| Q |
144 |
aaattcttggagaatcctagatgacaaattggtatgggaatatgat |
189 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5181576 |
aaattcttggagaatcctagatgagaaattggtatgggaatatgat |
5181531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 5172373 - 5172339
Alignment:
| Q |
144 |
aaattcttggagaatcctagatgacaaattggtat |
178 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
5172373 |
aaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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