View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0686_low_56 (Length: 219)

Name: NF0686_low_56
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0686_low_56
NF0686_low_56
[»] chr4 (1 HSPs)
chr4 (3-142)||(44300603-44300743)
[»] scaffold0036 (1 HSPs)
scaffold0036 (22-138)||(99893-100009)
[»] chr2 (1 HSPs)
chr2 (22-142)||(38404303-38404423)
[»] chr1 (2 HSPs)
chr1 (22-121)||(33814277-33814368)
chr1 (22-121)||(33873747-33873838)
[»] chr8 (1 HSPs)
chr8 (73-138)||(36236177-36236242)
[»] chr3 (1 HSPs)
chr3 (73-138)||(31232234-31232299)
[»] chr5 (1 HSPs)
chr5 (4-142)||(16190171-16190310)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 44300603 - 44300743
Alignment:
Q  3 aaagttggaaaaggtgactg-agaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgcc 101  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||    
T  44300603 aaagttggaaaaggtgattggagaggaatctcaaggaactatgtgaaaacaagaacacctacgcaggttgcaagtcatgctcaaaagtactttctccgcc 44300702  T
Q  102 gaagtaatctcaatcgccgtctccgtagatccagtctcttt 142  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  44300703 gaagtaatctcaatcgccgtcgccgtagatccagtctcttt 44300743  T

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Target: scaffold0036 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 99893 - 100009
Alignment:
Q  22 gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt 121  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||    
T  99893 gagaggaatctcaaggaactatgtgaaaacaagaacgcctatgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgt 99992  T
Q  122 ctccgtagatccagtct 138  Q
    | |||||||||||||||    
T  99993 cgccgtagatccagtct 100009  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 38404303 - 38404423
Alignment:
Q  22 gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt 121  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |||| || ||    
T  38404303 gagaggaatctcaaggaactatgtgaaaacaagaacgccttcgcaggttgcaagtcatgctcagaagtactttctctgccgaagtaatcgcaattgctgt 38404402  T
Q  122 ctccgtagatccagtctcttt 142  Q
    | || ||||||||||||||||    
T  38404403 cgccatagatccagtctcttt 38404423  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33814277 - 33814368
Alignment:
Q  22 gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt 121  Q
    |||| |||||||||||||||||||||||||||||| ||||||||        |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  33814277 gagaagaatctcaaggaactatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt 33814368  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33873747 - 33873838
Alignment:
Q  22 gagaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgt 121  Q
    |||| |||||||||||||||||||||||||||||| ||||||||        |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  33873747 gagaagaatctcaaggaactatgtgaaaacaagaacgcctacgc--------agtcatgctcagaagtactttctccgcctaagtaatttcaatcgccgt 33873838  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 36236242 - 36236177
Alignment:
Q  73 aagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtct 138  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||    
T  36236242 aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtct 36236177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 31232234 - 31232299
Alignment:
Q  73 aagtcatgctctgaagtactttctccgccgaagtaatctcaatcgccgtctccgtagatccagtct 138  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||    
T  31232234 aagtcatgctcagaagtactttctctgccgaagtaatctcaatcgctgtcgccgtagatccagtct 31232299  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 16190171 - 16190310
Alignment:
Q  4 aagttggaaaaggtgactg-agaggaatctcaaggaactatgtgaaaacaagaatgcctacgcaggttgcaagtcatgctctgaagtactttctccgccg 102  Q
    ||||||| |||||||| || |||||||| || || |||| ||||||||| || |  || || ||||||||||||||||||| |||||| || ||||||||    
T  16190171 aagttggtaaaggtgattggagaggaatttctagaaactttgtgaaaactaggacaccaactcaggttgcaagtcatgctcagaagtatttcctccgccg 16190270  T
Q  103 aagtaatctcaatcgccgtctccgtagatccagtctcttt 142  Q
       ||| |  |||||||| | ||| |||||||||||||||    
T  16190271 tcataaccagaatcgccgccgccggagatccagtctcttt 16190310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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