View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_6 (Length: 513)
Name: NF0686_low_6
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 57 - 501
Target Start/End: Original strand, 34084702 - 34085150
Alignment:
| Q |
57 |
catatcgtgattgctcaaa-tgtgaatgaatgtgattagatttgtatatagtaatcgtaatgaatacatataatccaaataagtatcaaaccattataga |
155 |
Q |
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| T |
34084702 |
catatcgtgattgctcaaaatgtgaatgaatgtgattagatttgtatatagtaatcgtaatgaatacatataatccaaataagtatcaaaccattataga |
34084801 |
T |
|
| Q |
156 |
tttaaatagatcagaaactatgactaaataatatctcaatttttccccnnnnnnnnnnnt---gaattagatcaatttcaaacctcaaatttctcatgca |
252 |
Q |
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| T |
34084802 |
tttaaatagatcagaaactatgactaaataatatctcaatttttccccaaaaaaaaaaaaaaagaattagatcaatttcaaacctcaaatttctcatgca |
34084901 |
T |
|
| Q |
253 |
gcattaatttccatgtgtgacttcaataccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctcc |
352 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34084902 |
gcattaatttccatgtgtgacttcaatgccttcacatgtccttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctcc |
34085001 |
T |
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| Q |
353 |
atgaacgcttcaacaatgacatgatggtgacactttgcattaagctgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctgtctct |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34085002 |
atgaacgcttcaacaatgacatgatggtgacactttgcattaagctgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctctctct |
34085101 |
T |
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| Q |
453 |
ccaatatcatttgaagtatagagtttcgaaaatcttcatacggctcctt |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085102 |
ccaatatcatttgaagtatagagtttcgaaaatcttcatacggctcctt |
34085150 |
T |
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