View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0687_high_13 (Length: 249)
Name: NF0687_high_13
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 46677118 - 46677041
Alignment:
| Q |
52 |
caattggtttgaatatgtatacttacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatat |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46677118 |
caattggtttgaatatgtatacgtacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatat |
46677041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 46681077 - 46681023
Alignment:
| Q |
75 |
tacttctgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatat |
129 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
46681077 |
tacttttgttgtgggaagatctttggagaatgctccaagtaaaagggcttgatat |
46681023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 6090991 - 6091039
Alignment:
| Q |
81 |
tgttgtgggaaaatctttggacaatgttccaagtaaaagggcttgatat |
129 |
Q |
| |
|
|||||||||||||| || || |||||||| | ||||||||||||||||| |
|
|
| T |
6090991 |
tgttgtgggaaaattttagggcaatgttcaaggtaaaagggcttgatat |
6091039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1825 times since January 2019
Visitors: 4432