View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0687_low_1 (Length: 542)

Name: NF0687_low_1
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0687_low_1
NF0687_low_1
[»] chr3 (10 HSPs)
chr3 (1-319)||(48528882-48529201)
chr3 (105-362)||(48531600-48531858)
chr3 (1-97)||(48531969-48532065)
chr3 (404-481)||(8431406-8431483)
chr3 (404-481)||(43073034-43073111)
chr3 (404-481)||(31525430-31525507)
chr3 (410-481)||(10454351-10454422)
chr3 (404-481)||(28934724-28934801)
chr3 (420-481)||(44656229-44656290)
chr3 (428-476)||(47820974-47821022)
[»] chr7 (10 HSPs)
chr7 (404-481)||(30655586-30655663)
chr7 (410-481)||(46691839-46691910)
chr7 (404-486)||(22197734-22197816)
chr7 (404-486)||(22240005-22240087)
chr7 (404-481)||(1039051-1039128)
chr7 (404-486)||(42598048-42598130)
chr7 (421-481)||(36615808-36615868)
chr7 (405-481)||(31424761-31424837)
chr7 (410-470)||(32679023-32679083)
chr7 (432-486)||(33320763-33320817)
[»] chr4 (10 HSPs)
chr4 (317-404)||(5341706-5341793)
chr4 (410-481)||(15186975-15187046)
chr4 (420-481)||(16572137-16572198)
chr4 (344-404)||(25222218-25222278)
chr4 (410-481)||(25641263-25641334)
chr4 (405-481)||(47571560-47571636)
chr4 (410-481)||(16662301-16662372)
chr4 (404-477)||(32183351-32183425)
chr4 (404-454)||(45511390-45511440)
chr4 (410-474)||(55133102-55133163)
[»] chr8 (10 HSPs)
chr8 (404-481)||(40930818-40930895)
chr8 (404-481)||(13959207-13959284)
chr8 (411-476)||(22839326-22839391)
chr8 (410-481)||(25829259-25829329)
chr8 (404-453)||(7845135-7845184)
chr8 (404-481)||(38086402-38086479)
chr8 (405-481)||(44362918-44362994)
chr8 (317-378)||(38542725-38542786)
chr8 (404-468)||(584123-584187)
chr8 (404-462)||(30836116-30836174)
[»] chr1 (12 HSPs)
chr1 (476-523)||(8294210-8294257)
chr1 (404-481)||(19472867-19472944)
chr1 (405-481)||(12173021-12173097)
chr1 (410-481)||(26990668-26990739)
chr1 (404-481)||(38548744-38548821)
chr1 (404-462)||(28447805-28447863)
chr1 (420-481)||(31833958-31834019)
chr1 (429-481)||(46757373-46757425)
chr1 (404-481)||(8462958-8463034)
chr1 (428-481)||(42442019-42442072)
chr1 (478-526)||(30148683-30148731)
chr1 (478-526)||(30153404-30153452)
[»] chr2 (6 HSPs)
chr2 (420-486)||(41419682-41419748)
chr2 (417-481)||(38908736-38908800)
chr2 (410-481)||(14732334-14732405)
chr2 (429-480)||(41378216-41378267)
chr2 (404-468)||(22649053-22649117)
chr2 (428-481)||(43356750-43356803)
[»] chr6 (6 HSPs)
chr6 (404-468)||(33112703-33112767)
chr6 (413-477)||(6575796-6575860)
chr6 (403-471)||(11546844-11546912)
chr6 (419-462)||(12754422-12754465)
chr6 (410-462)||(10246996-10247049)
chr6 (404-481)||(34761230-34761306)
[»] chr5 (7 HSPs)
chr5 (404-474)||(42241577-42241647)
chr5 (428-481)||(23172985-23173038)
chr5 (404-468)||(9931785-9931848)
chr5 (404-462)||(9597742-9597800)
chr5 (422-471)||(22887288-22887337)
chr5 (404-481)||(10431127-10431204)
chr5 (405-481)||(3677779-3677854)
[»] scaffold0209 (1 HSPs)
scaffold0209 (404-468)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (406-462)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 48529201 - 48528882
Alignment:
Q  1 agtttgtttggacaattccatattcaaatggtgtggagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgccaata 100  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48529201 agtttgtttggacaattccatattcaaatactgtggagtacaaaaaatatatatgtcaatgtttgaaatactttctatttgataaattactttgccaata 48529102  T
Q  101 acagaaacatgtttgacttgaaaaaggactgcaaattatgtt-cattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgtt 199  Q
    ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  48529101 acaaaaacatgtttgacttgaaaaagggctgcaaattatgtttcattctagtcttgtaattgtatatgtttggtgtttagttgtatttaaaaagcatgtt 48529002  T
Q  200 ggtgtgccagattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcgttgtatt 299  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  48529001 ggtgtgccatattctaggtaacaaatgatttgtatcatctaagactttgagcagacagaactgttcacctatcacgtcttgtttgcaagagcattgtatt 48528902  T
Q  300 tatgagatatgagaagctaa 319  Q
    ||||||||||||||||||||    
T  48528901 tatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 48531858 - 48531600
Alignment:
Q  105 aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531858 aaacatgtttgacttgaaaaaggactgcaaattatgttcattctagtcttgtaattgtatatgttgggtgtttagttgtacttaaaaagcatgttggtgt 48531759  T
Q  205 gccagattcttggtaacatatgatttgtatcatctaagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagc-gttgtatttatg 303  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  48531758 gccatattcttggtaacaaatgatttgtatcatataagactttgagcagacaaacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatg 48531659  T
Q  304 agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttggt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531658 agatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtggtgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 48532065 - 48531969
Alignment:
Q  1 agtttgtttggacaattccatattcaaatggtgtggagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca 97  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532065 agtttgtttggtcaattccatattcaaatggtgtggagtacaaaaaatatatatgtcaatgtttaaaatactttctatttgataaattactttgcca 48531969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 8431406 - 8431483
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 8431483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 43073034 - 43073111
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaa 43073111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 31525507 - 31525430
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || |||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaa 31525430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 10454422 - 10454351
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| ||| |||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaa 10454351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 28934724 - 28934801
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaa 28934801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 44656229 - 44656290
Alignment:
Q  420 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaa 44656290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 47821022 - 47820974
Alignment:
Q  428 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga 476  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| ||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtgga 47820974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 30655586 - 30655663
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaa 30655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 46691839 - 46691910
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||| ||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaa 46691910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 486
Target Start/End: Complemental strand, 22197816 - 22197734
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaacaaca 486  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| ||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaaaaaca 22197734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 486
Target Start/End: Original strand, 22240005 - 22240087
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaacaaca 486  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| ||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaaaaaca 22240087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 1039051 - 1039128
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| ||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaa 1039128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 486
Target Start/End: Complemental strand, 42598130 - 42598048
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaacaaca 486  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaaaaaca 42598048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 36615808 - 36615868
Alignment:
Q  421 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 36615868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 31424761 - 31424837
Alignment:
Q  405 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| ||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaa 31424837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 32679083 - 32679023
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcg 470  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 486
Target Start/End: Complemental strand, 33320817 - 33320763
Alignment:
Q  432 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaacaaca 486  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| ||||| ||||    
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaaaaaaaca 33320763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 5341793 - 5341706
Alignment:
Q  317 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 404  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtttgtttatttataggagct 5341706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 15186975 - 15187046
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| ||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaa 15187046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 16572198 - 16572137
Alignment:
Q  420 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaa 16572137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  344 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 404  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 25641263 - 25641334
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||| ||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaa 25641334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 47571560 - 47571636
Alignment:
Q  405 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| || ||||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaa 47571636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 16662301 - 16662372
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | |||||||||    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa 16662372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 32183425 - 32183351
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa 477  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| |||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaa 32183351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 454  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 474
Target Start/End: Original strand, 55133102 - 55133163
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg 474  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatg 55133163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 40930818 - 40930895
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 40930895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 13959207 - 13959284
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaa 13959284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 22839391 - 22839326
Alignment:
Q  411 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga 476  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||    
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatgga 22839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 25829259 - 25829329
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 25829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 453  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 38086402 - 38086479
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaa 38086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  405 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  317 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 378  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 468  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 30836116 - 30836174
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaa 30836174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 476 - 523
Target Start/End: Original strand, 8294210 - 8294257
Alignment:
Q  476 aaaaaacaacacattgataaatctacctgttgatgtgttggaattgat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8294210 aaaaaacaacacattgataaatctacctgttgatgtgttggaattgat 8294257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 19472944 - 19472867
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaa 19472867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 12173097 - 12173021
Alignment:
Q  405 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || |||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaa 12173021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 26990739 - 26990668
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || |||||||||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaa 26990668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 38548821 - 38548744
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| ||| |||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaa 38548744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 462
Target Start/End: Complemental strand, 28447863 - 28447805
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| |||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 28447805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 31834019 - 31833958
Alignment:
Q  420 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa 31833958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 46757425 - 46757373
Alignment:
Q  429 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaa 46757373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 8462958 - 8463034
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| |||| ||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaa 8463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 42442019 - 42442072
Alignment:
Q  428 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || ||||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaa 42442072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 30148683 - 30148731
Alignment:
Q  478 aaaacaacacattgataaatctacctgttgatgtgttggaattgatgat 526  Q
    ||||||| | ||||| ||||||||| || ||||||||||||||||||||    
T  30148683 aaaacaatatattgacaaatctaccggtcgatgtgttggaattgatgat 30148731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 30153404 - 30153452
Alignment:
Q  478 aaaacaacacattgataaatctacctgttgatgtgttggaattgatgat 526  Q
    ||||||| | ||||| ||||||||| || ||||||||||||||||||||    
T  30153404 aaaacaatatattgacaaatctaccggtcgatgtgttggaattgatgat 30153452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 41419748 - 41419682
Alignment:
Q  420 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaacaaca 486  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaaca 41419682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 417 - 481
Target Start/End: Complemental strand, 38908800 - 38908736
Alignment:
Q  417 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || ||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaa 38908736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 14732334 - 14732405
Alignment:
Q  410 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| ||| |||||    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaa 14732405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 480
Target Start/End: Original strand, 41378216 - 41378267
Alignment:
Q  429 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaa 480  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaa 41378267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 22649053 - 22649117
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 468  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| |||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagct 22649117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  428 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 33112703 - 33112767
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 468  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 6575860 - 6575796
Alignment:
Q  413 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa 477  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||||    
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaa 6575796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 11546912 - 11546844
Alignment:
Q  403 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcgg 471  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgg 11546844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 462
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  419 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 10247049 - 10246996
Alignment:
Q  410 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| |||||||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaa 10246996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 34761306 - 34761230
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| ||| |||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaa 34761230  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 42241577 - 42241647
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg 474  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatg 42241647  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 481
Target Start/End: Original strand, 23172985 - 23173038
Alignment:
Q  428 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaa 23173038  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 9931785 - 9931848
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 468  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| |||||||||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagct 9931848  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 22887337 - 22887288
Alignment:
Q  422 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcgg 471  Q
    ||||| |||||||||||| |||||||||| ||||||||||| ||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgg 22887288  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 481
Target Start/End: Complemental strand, 10431204 - 10431127
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaa 10431127  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 3677779 - 3677854
Alignment:
Q  405 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 481  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| |||||||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaa 3677854  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 468
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  404 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 468  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  406 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 462  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

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