View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_15 (Length: 320)
Name: NF0687_low_15
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 49993721 - 49993525
Alignment:
| Q |
26 |
gagtggtttggatttgatgggttgattttagctattgtatgtgttttcttcgttgttgttgtgaatggtgctggtgaaaaggaaaatgagtttgatgaaa |
125 |
Q |
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| T |
49993721 |
gagtggtttggatttgatgggttgattttagctattgtatgtgttttctttgttgttgttgtgaatggtgctggtgaaaaggaaaatgagtttgatgaaa |
49993622 |
T |
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| Q |
126 |
ctgaggaagaattgggtgattcaattgaagggaatgagagaaaaaagagtggtagatcatttaaaaagattgttttttcactaccttctgcttttat |
222 |
Q |
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| T |
49993621 |
ctgaggaagaattgggtgattcaattgaagggaatgagagaaaaaagagtggtagatcatttaaaaagattgttttttcactaccttctgcttttat |
49993525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 1875276 - 1875349
Alignment:
| Q |
29 |
tggtttggatttgatgggttgattttagctattgtatgtgttttcttcgttgttgttgtgaatggtgctggtga |
102 |
Q |
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| T |
1875276 |
tggtttggattagatggattggttttagccattgtttgtgtttgtttcattgtaattgtgaatggtgctggtga |
1875349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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