View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0687_low_17 (Length: 304)

Name: NF0687_low_17
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0687_low_17
NF0687_low_17
[»] chr7 (1 HSPs)
chr7 (1-296)||(33765733-33766028)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 33766028 - 33765733
Alignment:
Q  1 ctcataattagtctctaatctctgttgaatagtctaatgaacaaatacaaggagttgaatacttgtttttactgtgtaatttgccgacctaaaatgaaag 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  33766028 ctcataattagtctctaatctctattgaatagtctaatgaacaaatacaaggagttgaatacttgtttttactgtgtaatttgccgacctacagtgaaag 33765929  T
Q  101 tttaatcttattggtgagtgaggctacaattgtacaattaaaaattgagtacaagaaaataacccctattataatatcactgagaagggaaatggaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33765928 tttaatcttattggtgagtgaggctacaattgtacaattaaaaattgagtacaagaaaataacccctattataatatcactgagaggggaaatggaactt 33765829  T
Q  201 aagatagaaacaaaaacccaaacaaatttgttgcaggcttcgcctagatataacaattcgagcggattctacaatgcaacatttggtattcatctc 296  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33765828 aagatagaaacaaaaatccaaacaaatttgttgcaggcttcgcctagatataacaattcgagcggattctacaatgcaacatttggtattcatctc 33765733  T

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