View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_19 (Length: 289)
Name: NF0687_low_19
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 25540779 - 25540616
Alignment:
| Q |
60 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
159 |
Q |
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| T |
25540779 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa |
25540680 |
T |
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| Q |
160 |
atgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgt |
223 |
Q |
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| T |
25540679 |
atgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgt |
25540616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 25516165 - 25516333
Alignment:
| Q |
60 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
153 |
Q |
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| T |
25516165 |
catcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattagaaa-aacatgtttgcatatgaaaggtacacattcagttacttggtttac |
25516263 |
T |
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| Q |
154 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgt |
223 |
Q |
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| T |
25516264 |
tttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgt |
25516333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 25534248 - 25534081
Alignment:
| Q |
60 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac |
153 |
Q |
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| T |
25534248 |
catcttcaataattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagttgcatagaaaaggtacacattcagttacttggtttac |
25534150 |
T |
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| Q |
154 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgt |
223 |
Q |
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| T |
25534149 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgt |
25534081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 25526246 - 25526079
Alignment:
| Q |
60 |
catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatac------ttggtttac |
153 |
Q |
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|||| ||||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| || ||||||||||| | |||||| | || |||||| |
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| T |
25526246 |
catcttcagtaattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagctgcatatgaaatgcacacattcagttagtttgtttac |
25526148 |
T |
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| Q |
154 |
tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgt |
223 |
Q |
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| T |
25526147 |
tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgt |
25526079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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