View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_2 (Length: 533)
Name: NF0687_low_2
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 47574678 - 47575177
Alignment:
| Q |
13 |
aatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctacttt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47574678 |
aatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctacttt |
47574777 |
T |
|
| Q |
113 |
acttcattcaatttctcatgtctattactttattttacctaaaaataattttcattc------attgatgcccactaaacaggctttcttgttttcatat |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47574778 |
acttcattcaatttctcatgtctattactttattttacctaaaaataattttcattcatattcattgatgcccactaaacaggctttcttgttttcatat |
47574877 |
T |
|
| Q |
207 |
gtagtggatatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtgg |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47574878 |
gtagtggatatatatctccataatatgcaatgcatggatatttttctgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtgg |
47574977 |
T |
|
| Q |
307 |
aaagaagaaaggttgttatgctgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaa |
406 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47574978 |
aaagaagaaaggttgttatgctgaatcagaatgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaa |
47575077 |
T |
|
| Q |
407 |
tga-nnnnnnncattaacaaatgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
505 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47575078 |
tgattttttttcattaacaaatggatattgtaggcttggacaaaatggccagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
47575177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 47584378 - 47584865
Alignment:
| Q |
13 |
aatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctacttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||| |||||||||| || ||||||||||| |
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| T |
47584378 |
aatatcagattttggcatggctagaattgtatctatagatcaaattgaagaaagcacgtgcacgattgtaggaacatagtaagcttacgattcctacttt |
47584477 |
T |
|
| Q |
113 |
acttcattcaatttct--catgtctattactttattttacctaaaaataattttcattcattgatgcccactaaacaggctttcttgtttt-catatgta |
209 |
Q |
| |
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|||| ||||| ||| ||||||| || |||||||| ||| ||| | | |||| | |||||||| |||||| ||||| ||||| || |
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| T |
47584478 |
actttattcaccttcatacatgtctttt--------ttacctaacaatcattatgagc----gatgtctactaaacaaactttctcgtttttcatatata |
47584565 |
T |
|
| Q |
210 |
gtggatatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaa |
309 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
47584566 |
gtggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaa |
47584665 |
T |
|
| Q |
310 |
gaagaaaggttgttatgctgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcat-tatagag---ttgaaaaa |
405 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||| | |||||| |||||| | |
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| T |
47584666 |
gaggaaaggttgttcggctgaatcagagtgtgttgatgacatccggagatatgtgagtcaaaaatttcttagacttctcttgaatagagtttttgaaaga |
47584765 |
T |
|
| Q |
406 |
atgannnnnnncattaacaaatgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
505 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||| |
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| T |
47584766 |
attgttttcttaattgacaaatgaatattgtaggcttggacaaaatgggcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttatt |
47584865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 315
Target Start/End: Original strand, 47627675 - 47627769
Alignment:
| Q |
221 |
tctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
315 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| | |||||||||||| | |||||| ||| | |||||||| || |||||||||||||| ||||| |
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|
| T |
47627675 |
tctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaa |
47627769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 10401531 - 10401422
Alignment:
| Q |
206 |
tgtagtggatatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtg |
305 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||| | ||||| | ||| |||||||| |||||||| ||| ||||| || | |||||||||| || |
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|
| T |
10401531 |
tgtagaggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactg |
10401432 |
T |
|
| Q |
306 |
gaaagaagaa |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
10401431 |
gaaagaagaa |
10401422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 20233470 - 20233570
Alignment:
| Q |
215 |
tatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaaga |
314 |
Q |
| |
|
||||| |||||||||||||| |||| || | ||||| | ||| |||||||| |||||||| ||| |||||||| |||||||||||| |||||||||| |
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|
| T |
20233470 |
tatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaaga |
20233569 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
20233570 |
a |
20233570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 22127454 - 22127554
Alignment:
| Q |
215 |
tatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaaga |
314 |
Q |
| |
|
||||| |||||||||||||| |||| || | ||||| | ||| |||||||| |||||||| ||| |||||||| |||||||||||| |||||||||| |
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|
| T |
22127454 |
tatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaaga |
22127553 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
22127554 |
a |
22127554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 2672706 - 2672770
Alignment:
| Q |
203 |
atatgtagtggatatatatctccagaatatgcaatgcatggatatttttccgtgaagtctgatgt |
267 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||| |||||||||||| | ||| |||||||| |
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|
| T |
2672706 |
atatgcagcggatatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgt |
2672770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31176907 - 31176867
Alignment:
| Q |
209 |
agtggatatatatctccagaatatgcaatgcatggatattt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31176907 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31176867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31188202 - 31188162
Alignment:
| Q |
209 |
agtggatatatatctccagaatatgcaatgcatggatattt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31188202 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31188162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31196258 - 31196218
Alignment:
| Q |
209 |
agtggatatatatctccagaatatgcaatgcatggatattt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31196258 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31196218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31214870 - 31214830
Alignment:
| Q |
209 |
agtggatatatatctccagaatatgcaatgcatggatattt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
31214870 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31214830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 31229687 - 31229647
Alignment:
| Q |
209 |
agtggatatatatctccagaatatgcaatgcatggatattt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
31229687 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31229647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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