View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_22 (Length: 274)
Name: NF0687_low_22
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 13650955 - 13651208
Alignment:
| Q |
1 |
ccatctgactcatcatcactgctcccagacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctc |
100 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13650955 |
ccatctgactcatcttcactgctccctgacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctc |
13651054 |
T |
|
| Q |
101 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651055 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
13651154 |
T |
|
| Q |
201 |
tacaaacaagttaactggcttgtttactttcaaagcatattccttcatctcact |
254 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13651155 |
tacaaacaagttaactggcttgttttctttcaaagcatattccttcatctcact |
13651208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 47734239 - 47733986
Alignment:
| Q |
1 |
ccatctgactcatcatcactgctcccagacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47734239 |
ccatctgactcatcttcactgctccctgacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctattccatctc |
47734140 |
T |
|
| Q |
101 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47734139 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
47734040 |
T |
|
| Q |
201 |
tacaaacaagttaactggcttgtttactttcaaagcatattccttcatctcact |
254 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47734039 |
tacaaacaagttaactggcttgttttctttcaaagcatattccttcatctcact |
47733986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 41772482 - 41772735
Alignment:
| Q |
1 |
ccatctgactcatcatcactgctcccagacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41772482 |
ccatctgactcatcttcactgctcccatacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctc |
41772581 |
T |
|
| Q |
101 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
41772582 |
catttacatcaacctcagaactttgtccaacttccctattactaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttc |
41772681 |
T |
|
| Q |
201 |
tacaaacaagttaactggcttgtttactttcaaagcatattccttcatctcact |
254 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41772682 |
tacaaaaaagttaattggcttgtttactttcaaagcatattccttcatctcact |
41772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 35597652 - 35597399
Alignment:
| Q |
1 |
ccatctgactcatcatcactgctcccagacttctcatcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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| T |
35597652 |
ccatctgactcatcttcactgctccctaacttctcatcatcataacacaccaacacacattttcctttcttgtctaccttttccttctctagtccttctc |
35597553 |
T |
|
| Q |
101 |
catttacatcaacctgagaactttgtccaacttccctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35597552 |
catttacatcaacctgagaactttgtccaacttccctattagtaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttc |
35597453 |
T |
|
| Q |
201 |
tacaaacaagttaactggcttgtttactttcaaagcatattccttcatctcact |
254 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35597452 |
tacaaaaaagttaactggcttgtttactttcaaagcatattccttcatctcact |
35597399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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