View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0687_low_24 (Length: 267)
Name: NF0687_low_24
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_24 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 13650989 - 13651208
Alignment:
| Q |
28 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13650989 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
13651088 |
T |
|
| Q |
128 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgtttactttcaaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13651089 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaa |
13651188 |
T |
|
| Q |
228 |
gcatattccttcatctcact |
247 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13651189 |
gcatattccttcatctcact |
13651208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 47734205 - 47733986
Alignment:
| Q |
28 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47734205 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctattccatctccatttacatcaacctgagaactttgtccaacttc |
47734106 |
T |
|
| Q |
128 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgtttactttcaaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47734105 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgttttctttcaaa |
47734006 |
T |
|
| Q |
228 |
gcatattccttcatctcact |
247 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47734005 |
gcatattccttcatctcact |
47733986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 41772516 - 41772735
Alignment:
| Q |
28 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41772516 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccttctccatttacatcaacctcagaactttgtccaacttc |
41772615 |
T |
|
| Q |
128 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgtttactttcaaa |
227 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
41772616 |
cctattactaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaattggcttgtttactttcaaa |
41772715 |
T |
|
| Q |
228 |
gcatattccttcatctcact |
247 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41772716 |
gcatattccttcatctcact |
41772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 35597618 - 35597399
Alignment:
| Q |
28 |
catcatcagaacacaccaacacaccttttcctttcttatctaccttttccttctctagtccatctccatttacatcaacctgagaactttgtccaacttc |
127 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
35597618 |
catcatcataacacaccaacacacattttcctttcttgtctaccttttccttctctagtccttctccatttacatcaacctgagaactttgtccaacttc |
35597519 |
T |
|
| Q |
128 |
cctattaataacagtaacacagcttggaacatccaccaacatactaacttcatcaacatcatgttctacaaacaagttaactggcttgtttactttcaaa |
227 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35597518 |
cctattagtaacagtaacacagtttggaacatccaccaacctactaacttcatcaacatcatgttctacaaaaaagttaactggcttgtttactttcaaa |
35597419 |
T |
|
| Q |
228 |
gcatattccttcatctcact |
247 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35597418 |
gcatattccttcatctcact |
35597399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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