View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_3 (Length: 525)
Name: NF0687_low_3
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 55156957 - 55156734
Alignment:
| Q |
30 |
cagtttccttctccaattctnnnnnnnngaaagataaatgagaatatgaatttgtagtgaaagtgaatttaattctatttattatattctcaaatgaagc |
129 |
Q |
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| T |
55156957 |
cagtttccttctccaattctaaaaaaaagaaagataaatgagaatatgaatttgtagtgaaagtgaatttaattctatttattatattctcaaatgaagc |
55156858 |
T |
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| Q |
130 |
aaaaatagttgggataaaataatttgaatgataaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaatacc |
229 |
Q |
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| T |
55156857 |
aaaaatagttgggataaaataatttgaatgataaaatggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaatacc |
55156758 |
T |
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| Q |
230 |
agaatttcacacactatcaagtat |
253 |
Q |
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| T |
55156757 |
agaatttcacacactatcaagtat |
55156734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 54573639 - 54573459
Alignment:
| Q |
66 |
aatgagaatatgaatttgtagtgaaagtgaatttaattctatttattatattctcaaatgaagcaaaaatagttgggataaaataatttgaatgataaaa |
165 |
Q |
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| T |
54573639 |
aatgagaatatgaatttgtagcgaaagtgaatttaattctatctat---attctcaaatgaagcataaatagttagggtaaaataatttgaatagtaaaa |
54573543 |
T |
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| Q |
166 |
tggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
249 |
Q |
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| T |
54573542 |
tggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagacactaaaaatatcagaatttcacacactatcaa |
54573459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 334 - 441
Target Start/End: Complemental strand, 55156653 - 55156546
Alignment:
| Q |
334 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
433 |
Q |
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| T |
55156653 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
55156554 |
T |
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| Q |
434 |
tgactcca |
441 |
Q |
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| T |
55156553 |
tgactcca |
55156546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 334 - 441
Target Start/End: Complemental strand, 54573386 - 54573279
Alignment:
| Q |
334 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
433 |
Q |
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| T |
54573386 |
attgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtctttagattatccacttcccat |
54573287 |
T |
|
| Q |
434 |
tgactcca |
441 |
Q |
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|||||||| |
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| T |
54573286 |
tgactcca |
54573279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 515
Target Start/End: Complemental strand, 54573244 - 54573205
Alignment:
| Q |
476 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
515 |
Q |
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| T |
54573244 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
54573205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 515
Target Start/End: Complemental strand, 55156511 - 55156472
Alignment:
| Q |
476 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
515 |
Q |
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| T |
55156511 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
55156472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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