View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_5 (Length: 483)
Name: NF0687_low_5
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 66 - 454
Target Start/End: Complemental strand, 2031518 - 2031124
Alignment:
| Q |
66 |
gtgagatgaacagctcatcttattagggatacaattatcgctatccaatgatgcaattgcaaatctccccaaaaagatgcaccatgtattatacatcaag |
165 |
Q |
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| T |
2031518 |
gtgagatgaacagctcatcttattagggatacaattatcgctatccaatgaagcaattgcaaatctccccaaaaagatgcaccatgtattatacatcaag |
2031419 |
T |
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| Q |
166 |
ggaacacttataatga------catatagttgggtaggtatcaaaactttaaagtaaatataattgggaaataacaagtatagtaatgtttaactagttc |
259 |
Q |
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| T |
2031418 |
ggaacacttataatgagaatgacatatagttgggtaggtatcaaaactttaaagtaaatataattgggaaataacaagtatagtaatgtttaaccagttc |
2031319 |
T |
|
| Q |
260 |
gaaagtgaaagtacacatatagcaccatgcaaactatagagcaaggaatggacctgatccttttgaatggaaaaataacataagagcaagcttagcaaat |
359 |
Q |
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| T |
2031318 |
gaaagtgaaagtacacatatagcaccatgcaaactatagagcaagtaatggacctgatccttttgaatggaaaaataacataagagcaagcttagcaaat |
2031219 |
T |
|
| Q |
360 |
aatgagaatttacaaaatgagttcagtgtaacaattttacctgaaagtgtaggctgttaatgcagcacccgatccgcaaaaacagcggaaccatg |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2031218 |
aatgagaatttacaaaatgagttcagtgtaacaattttacctgaaagtgtaggctgttaatgcagcacccgatccgcaaaaacagcggaaccatg |
2031124 |
T |
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