View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0687_low_8 (Length: 406)
Name: NF0687_low_8
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 118 - 400
Target Start/End: Original strand, 31610383 - 31610666
Alignment:
| Q |
118 |
atcatcagagtgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaaaccagaatcctactatcat |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31610383 |
atcatcagagcgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaagccagaatcctactatcat |
31610482 |
T |
|
| Q |
218 |
agttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataagaataggaattaaatttcag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31610483 |
agttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataagaataggaatcaaatttcag |
31610582 |
T |
|
| Q |
318 |
tcaaattttgaagcaaaataatatcacaaacaaaaataatgtattcaaaatgatgatc-tgattggccttaaggttcatctcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
31610583 |
tcaaattttgaagcaaaataatatcacaaacaaaaagaatgtattcaaaatgatgatcttgattggccttaaggttcatatcac |
31610666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 833 times since January 2019
Visitors: 4356