View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0687_low_9 (Length: 384)
Name: NF0687_low_9
Description: NF0687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0687_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 51190711 - 51190421
Alignment:
| Q |
1 |
aattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtttatcgaaatttgaagacgaggagattctgagattgttgccgaaatgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51190711 |
aattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtttatcgaaatttgaagacgaggagattctgagattgttgccgaaatgcaa |
51190612 |
T |
|
| Q |
101 |
gcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctacttgtcctctttgcaggtatatggttgaagaaagtgacatcagaaacttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51190611 |
gcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctacttgtcctctttgcaggtatatggttgaagaaagtgacatcagaaacttc |
51190512 |
T |
|
| Q |
201 |
accttttcattcagctcaagattcttaagagtcccttcaaatttaagtgaagatccaaatcttgaaatctttattcagagacaaccatcac |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51190511 |
accttttcattcagctcaagattcttaagagtcccttcaaatttaagtgaagatccaaatcttgaaatctttattcagagacaaccatcac |
51190421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 51190385 - 51190351
Alignment:
| Q |
321 |
catgaacttgttcttcttgatcatgaagaaggtgg |
355 |
Q |
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| T |
51190385 |
catgaacttgttcttcttgatcatgaagaaggtgg |
51190351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 33512375 - 33512540
Alignment:
| Q |
1 |
aattctcttctttaaaaggatccaaacaaggcttagaatgtaccgtttgtttatcgaaatttgaagacgaggagattctgagattgttgccgaaatgcaa |
100 |
Q |
| |
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||||||||||| | ||||| || |||||||| || |||||| | | ||||| |||||||| |||||| || ||| | |||||||| || ||||| || |
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| T |
33512375 |
aattctcttctctcaaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattttaagattgttaccaaaatgtaa |
33512474 |
T |
|
| Q |
101 |
gcatgcttttcatatgaattgtattgacaagtggcttgaaagtcactctacttgtcctctttgcag |
166 |
Q |
| |
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|||||||||||||| |||||||||| | |||||||| | ||||| | ||||||| ||||||| |
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| T |
33512475 |
acatgcttttcatattgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcag |
33512540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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