View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_10 (Length: 433)
Name: NF0688_high_10
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 230396 - 230220
Alignment:
| Q |
23 |
catcatatagttttggtggtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaactcatctccagcac |
122 |
Q |
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| T |
230396 |
catcatatagttttggttgtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaactcatctccagcac |
230297 |
T |
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| Q |
123 |
cacccactcctccttctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccaccc |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230296 |
cacccactcctcctgctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccaccc |
230220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 280 - 422
Target Start/End: Complemental strand, 230139 - 229997
Alignment:
| Q |
280 |
acctgttcagcaatctcctcctccaaccccactcactcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccattc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230139 |
acctgttcagcaatctcctcctccaaccccactcactcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccattc |
230040 |
T |
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| Q |
380 |
tctcctccccctgctactccacctcccgcaactccacctccag |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230039 |
tctcctccccctgctactccacctcccgcaactccacctccag |
229997 |
T |
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