View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0688_high_14 (Length: 405)
Name: NF0688_high_14
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 29 - 395
Target Start/End: Original strand, 49462410 - 49462776
Alignment:
| Q |
29 |
ataaagggtcttctttaatggtgttggaagatagtgggaatttggttttgcttgggaaggataatagtacggtaatttggcaaagttttgattttcctac |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49462410 |
ataaaggggcttctttaatggtgttggaagatagtgggaatttggttttgcttgggaaggataatagtacggtaatttggcaaagttttgattttcctac |
49462509 |
T |
|
| Q |
129 |
tgatactttgatgcctcaacaggtttttaaggaaggaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49462510 |
tgatactttgatgcctcaacaggtttttaaggaaggaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggt |
49462609 |
T |
|
| Q |
229 |
aatgttgttctttctgctggttttaaaattccacaggtttattggactatgcagaaggataacaggaaaaccattgataaggatggtcatgttgtggttt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49462610 |
aatgttgttctttctgctggttttaaaattccacaggtttattggactatgcaggaggataacaggaaaaccattgataaggatggtcatgttgtggttt |
49462709 |
T |
|
| Q |
329 |
cggcgaatcttagtgacaattcttggagattttatgatgacaagaagtctttgttgtggcaattcat |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49462710 |
cggcgaatcttagtgacaattcttggagattttatgatgacaagaagtctttgttgtggcaattcat |
49462776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 392
Target Start/End: Complemental strand, 10071399 - 10071180
Alignment:
| Q |
173 |
ttactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattg |
272 |
Q |
| |
|
|||| |||||||||| | ||||||| | ||||||||||||| |||| ||||||||||||| | || ||||||||||||| ||| ||||| | ||| | |
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|
| T |
10071399 |
ttacaagtgaacctattccaaataactcgacctatgttcttcagataaaatctggtaatgctattgtttctgctggtttggaaactccactgacttacta |
10071300 |
T |
|
| Q |
273 |
gactatgcagaaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaag |
372 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||||||||||| | ||||| ||| | | || ||| | ||| |||||| |||||||| ||||| || ||| |
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|
| T |
10071299 |
gactatgcagaagggtaaccgcaaaacaattgataaggacaataatgttttggctactgcaaatatcagtaacaatttatggagattgtatgacgagaag |
10071200 |
T |
|
| Q |
373 |
aagtctttgttgtggcaatt |
392 |
Q |
| |
|
| ||||||||||| |||||| |
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|
| T |
10071199 |
atgtctttgttgttgcaatt |
10071180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 7815187 - 7815117
Alignment:
| Q |
191 |
caaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattcca |
261 |
Q |
| |
|
||||||| ||||||| |||| ||||||| ||||||||||||||| | ||||| ||| |||| |||| |||| |
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|
| T |
7815187 |
caaataacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 67 - 395
Target Start/End: Complemental strand, 33802018 - 33801687
Alignment:
| Q |
67 |
aatttggttttgcttgggaaggat---aatagtacggtaatttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaag |
163 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||||||||||| || ||| ||||||||||| |||||| ||| | ||| || || | |
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|
| T |
33802018 |
aatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaagagg |
33801919 |
T |
|
| Q |
164 |
gaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccaca |
263 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| |||||| |
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|
| T |
33801918 |
gaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccaca |
33801819 |
T |
|
| Q |
264 |
ggtttattggactatgcagaaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttat |
363 |
Q |
| |
|
| |||||||||||||||||| |||||| | ||||| ||| | ||| ||||| ||||||||| || || ||||| ||||| ||||||||||| || ||| |
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|
| T |
33801818 |
gacttattggactatgcagaatgataaccgtaaaacgattaacaagaatggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttctat |
33801719 |
T |
|
| Q |
364 |
gatgacaagaagtctttgttgtggcaattcat |
395 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||| |
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|
| T |
33801718 |
gataacaataagtctttgttatggcaattcat |
33801687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 67 - 395
Target Start/End: Original strand, 33811804 - 33812135
Alignment:
| Q |
67 |
aatttggttttgcttgggaaggat---aatagtacggtaatttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaag |
163 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||||||||||||| || ||| |||||||||||||||| | ||||| ||| || || | |
|
|
| T |
33811804 |
aatttggttttgcttggtaaggacgacaataatacggtaatttggcaaagttttagttatccaactgatactttgatgcattcacaggatttcaaagagg |
33811903 |
T |
|
| Q |
164 |
gaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccaca |
263 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| |||||| |
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|
| T |
33811904 |
gaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccaca |
33812003 |
T |
|
| Q |
264 |
ggtttattggactatgcagaaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttat |
363 |
Q |
| |
|
| |||||||||||||||||| |||||| | |||| | ||||||||| || |||||||||| | || ||| | || ||||||||||||||||| ||| |
|
|
| T |
33812004 |
gacttattggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctat |
33812103 |
T |
|
| Q |
364 |
gatgacaagaagtctttgttgtggcaattcat |
395 |
Q |
| |
|
||| |||| | ||||||||| ||| ||||||| |
|
|
| T |
33812104 |
gataacaataggtctttgttatggaaattcat |
33812135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 67 - 395
Target Start/End: Complemental strand, 33806500 - 33806169
Alignment:
| Q |
67 |
aatttggttttgcttgggaaggat---aatagtacggtaatttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaag |
163 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||||||||||| || ||| ||||||||||| |||||| ||| | ||| || || | |
|
|
| T |
33806500 |
aatttggttttgcttggtaacgacgacaataatacggtaatttggcaaagttttagttatccaactgatactttaatgccttcacaagatttcaaagagg |
33806401 |
T |
|
| Q |
164 |
gaatgaagattactagtgaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccaca |
263 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| |||||| |
|
|
| T |
33806400 |
gaatgaaacttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccaca |
33806301 |
T |
|
| Q |
264 |
ggtttattggactatgcagaaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttat |
363 |
Q |
| |
|
| |||||||||||||||||| |||||| | |||| | ||||||||| || |||||||||| | || ||| | || ||||||||||||||||| ||| |
|
|
| T |
33806300 |
gacttattggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctat |
33806201 |
T |
|
| Q |
364 |
gatgacaagaagtctttgttgtggcaattcat |
395 |
Q |
| |
|
||| |||| | ||||||||| ||| ||||||| |
|
|
| T |
33806200 |
gataacaataggtctttgttatggaaattcat |
33806169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 96 - 395
Target Start/End: Original strand, 31027510 - 31027809
Alignment:
| Q |
96 |
tacggtaatttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaaggaatgaagattactagtgaacctagttcaaat |
195 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||||||| |||| || || || |||||||| |||| |||||||||||| ||||| |
|
|
| T |
31027510 |
tacggtaatttggcaaagttttagttatccaactgatactttgatgccttcgcaggaattcaaagagggaatgaaacttaccagtgaacctagtccaaat |
31027609 |
T |
|
| Q |
196 |
aatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattggactatgcagaaggataacagga |
295 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||||||| ||||||| ||||||| |||| |||||| |||||||||||||||||||||||| | | |
|
|
| T |
31027610 |
aacttgacctatgttcttgagatcaaatcaggtaatgttattctttcagctggttacaaaactccacaaacatattggactatgcagaaggataaccgta |
31027709 |
T |
|
| Q |
296 |
aaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaagaagtctttgttgtggcaattcat |
395 |
Q |
| |
|
||| || ||||||| || |||||||||| | || ||||| ||||||||||||||||| || |||||| |||| ||||||||||| ||||||||||| |
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|
| T |
31027710 |
aaataatagataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacaataagtctttgttatggcaattcat |
31027809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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