View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_15 (Length: 397)
Name: NF0688_high_15
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 2928618 - 2928489
Alignment:
| Q |
208 |
caaacctcaaaggtacccgatcaactaactta----tactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactgccgaa |
303 |
Q |
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| T |
2928618 |
caaacctcaaaggtactcgatcaaccaactgactgatactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaa |
2928519 |
T |
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| Q |
304 |
acagtacaccagagattgacagactagttg |
333 |
Q |
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| T |
2928518 |
acagtacaccagagattgacagactagttg |
2928489 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 3002717 - 3002773
Alignment:
| Q |
231 |
actaacttatactacgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
287 |
Q |
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| T |
3002717 |
actaactgatactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
254 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
294 |
Q |
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| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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