View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_26 (Length: 339)
Name: NF0688_high_26
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 37 - 330
Target Start/End: Original strand, 14812310 - 14812605
Alignment:
| Q |
37 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
136 |
Q |
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| T |
14812310 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
14812409 |
T |
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| Q |
137 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14812410 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaa |
14812509 |
T |
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| Q |
235 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
330 |
Q |
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| T |
14812510 |
caaaagcctctttggaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
14812605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 37 - 330
Target Start/End: Original strand, 15259305 - 15259600
Alignment:
| Q |
37 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
136 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15259305 |
gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
15259404 |
T |
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| Q |
137 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
234 |
Q |
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| T |
15259405 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaa |
15259504 |
T |
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| Q |
235 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
330 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15259505 |
caaaagcctctttgtaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
15259600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
| Q |
37 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
136 |
Q |
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||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
14804890 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
14804989 |
T |
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| Q |
137 |
ccataaccattatctctaat |
156 |
Q |
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| T |
14804990 |
cagcaaccattgtctctaat |
14805009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
| Q |
37 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
136 |
Q |
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||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
15251884 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
15251983 |
T |
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| Q |
137 |
ccataaccattatctctaat |
156 |
Q |
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| T |
15251984 |
cagcaaccattgtctctaat |
15252003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 37 - 330
Target Start/End: Complemental strand, 17521870 - 17521575
Alignment:
| Q |
37 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
136 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17521870 |
gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
17521771 |
T |
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| Q |
137 |
ccataaccattatctctaatagtgcaaatttgtatccacatattctt--gagtttaacagcgagacttctctatatatcttcagatattgttttcccaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
17521770 |
ccataaccattatctctaatagtgcaaatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaa |
17521671 |
T |
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| Q |
235 |
caaaagcctctttgcaaggtgcattttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
330 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521670 |
caaaagcctctttgcaaggtgctttttatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
17521575 |
T |
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