View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_29 (Length: 310)
Name: NF0688_high_29
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 42822791 - 42822975
Alignment:
| Q |
54 |
agatgaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttcttgtcactttcaaaagaagcagtgtaaaa |
153 |
Q |
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| T |
42822791 |
agattaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttcttgtcactttcaaaagaagcagtgtaaaa |
42822890 |
T |
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| Q |
154 |
cactccaaagatgtaccataataaatagtaacgtaactaaaatctgctattcattgaatatgagaatatcttggacacccaaatt |
238 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42822891 |
cactccaaagatgtaccataataaatactaacgtaactaaaatctgatattcattgaatatgagaatatcttggacacccaaatt |
42822975 |
T |
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