View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_33 (Length: 297)
Name: NF0688_high_33
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_33 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18439350 - 18439124
Alignment:
| Q |
1 |
attatgtatactgatttgtgacccctattttcctatacaaaactactatatatattattattaagtaactgaaaataacagtcacaaactaaatgccttc |
100 |
Q |
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| T |
18439350 |
attatgtattttgatttgtgacccctattttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcacaaactaaatgccttc |
18439251 |
T |
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| Q |
101 |
gacacatgttttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcattgtc |
200 |
Q |
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| T |
18439250 |
gacacatattttgatatgctttccaatttcttgataagttcccgcgtgtcttcgaca-tttaatcatgcttcgtcatgaataatttgaattttcattgtc |
18439152 |
T |
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| Q |
201 |
gaagctaataaaatttgcaacctctatg |
228 |
Q |
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| T |
18439151 |
gaagctaataaactttgcaacctctatg |
18439124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18450208 - 18449982
Alignment:
| Q |
1 |
attatgtatactgatttgtgacccctattttcctatacaaaactactatatatattattattaagtaactgaaaataacagtcacaaactaaatgccttc |
100 |
Q |
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| T |
18450208 |
attatgtattttgatttgtgacccctattttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcacaaactaaatgccttc |
18450109 |
T |
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| Q |
101 |
gacacatgttttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcattgtc |
200 |
Q |
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| T |
18450108 |
gacacatattttgatatgctttccaatttcttgataagttcccgcgtgtcttcgaca-tttaatcatgcttcgtcatgaataatttgaattttcattgtc |
18450010 |
T |
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| Q |
201 |
gaagctaataaaatttgcaacctctatg |
228 |
Q |
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| T |
18450009 |
gaagctaataaactttgcaacctctatg |
18449982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 18455282 - 18455075
Alignment:
| Q |
20 |
gacccctattttcctatacaaaactactatatatattattattaagtaactgaaaataacagtcacaaactaaatgccttcgacacatgttttgatatgc |
119 |
Q |
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| T |
18455282 |
gacccctattttcctatacaaaactactatatatactattattaagtaactgaaaataacagtcacaaactaaatgccttcgacacatattttgatatgc |
18455183 |
T |
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| Q |
120 |
tttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcattgtcgaagctaataaaatttgca |
219 |
Q |
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| T |
18455182 |
tttccaatttcttgataagttcccgcgtgtcttcgaca-tttaatcatgcttcgtcatgaataatttgaattttcattgtcgaagctaataaactttgca |
18455084 |
T |
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| Q |
220 |
acctctatg |
228 |
Q |
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| T |
18455083 |
acctctatg |
18455075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 23739509 - 23739563
Alignment:
| Q |
66 |
taactgaaaataacagtcacaaactaaatgccttcgacacatgttttgatatgct |
120 |
Q |
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| T |
23739509 |
taactgaaaataaaagtcacaaaataaatgccttcgacacatgtcttgatatgct |
23739563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 113659 - 113609
Alignment:
| Q |
66 |
taactgaaaataacagtcacaaactaaatgccttcgacacatgttttgata |
116 |
Q |
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||||||||||| || |||||||||||||||| ||||| |||||| |||||| |
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| T |
113659 |
taactgaaaatgacggtcacaaactaaatgctttcgatacatgtcttgata |
113609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 74086 - 74135
Alignment:
| Q |
72 |
aaaataacagtcacaaactaaatgccttcgacacatgttttgatatgctt |
121 |
Q |
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| T |
74086 |
aaaataacagtcacaaactaaaagtcttcgacacatatcttgatatgctt |
74135 |
T |
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