View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_high_44 (Length: 261)

Name: NF0688_high_44
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_high_44
NF0688_high_44
[»] chr1 (1 HSPs)
chr1 (29-261)||(1717083-1717315)
[»] chr3 (18 HSPs)
chr3 (41-249)||(19848868-19849079)
chr3 (41-249)||(20036632-20036843)
chr3 (40-246)||(26646890-26647090)
chr3 (30-248)||(19950994-19951212)
chr3 (41-227)||(19989403-19989589)
chr3 (170-261)||(19812290-19812381)
chr3 (146-249)||(19956070-19956173)
chr3 (180-247)||(19853532-19853599)
chr3 (160-249)||(20016230-20016319)
chr3 (151-243)||(19858063-19858155)
chr3 (160-247)||(19943720-19943805)
chr3 (146-243)||(19838379-19838476)
chr3 (160-249)||(24840003-24840092)
chr3 (176-261)||(30914659-30914744)
chr3 (159-261)||(19818556-19818658)
chr3 (155-249)||(20046118-20046212)
chr3 (107-247)||(26653099-26653239)
chr3 (30-123)||(20016356-20016447)
[»] chr8 (4 HSPs)
chr8 (146-247)||(22652119-22652220)
chr8 (180-261)||(22685697-22685778)
chr8 (160-249)||(22689684-22689773)
chr8 (42-98)||(22685843-22685899)
[»] chr4 (2 HSPs)
chr4 (155-249)||(6397767-6397861)
chr4 (157-243)||(6398258-6398344)
[»] chr5 (2 HSPs)
chr5 (138-243)||(26354962-26355067)
chr5 (159-261)||(9815036-9815138)
[»] chr7 (3 HSPs)
chr7 (192-244)||(12581424-12581476)
chr7 (192-247)||(12497241-12497296)
chr7 (192-247)||(12521106-12521161)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 1717083 - 1717315
Alignment:
Q  29 attaccctgtcattggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1717083 attaccctgtcattggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagataaattgatccttgcaagagaacaactttatag 1717182  T
Q  129 gaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717183 gaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcg 1717282  T
Q  229 gtttatgtttttcctcataaagctttggtgaaa 261  Q
    |||||||||||||||||||||||||||||||||    
T  1717283 gtttatgtttttcctcataaagctttggtgaaa 1717315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 19848868 - 19849079
Alignment:
Q  41 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaagg 137  Q
    |||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||    
T  19848868 ttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatgg 19848967  T
Q  138 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtt 237  Q
    ||||  | |||| ||| |||  ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  19848968 aggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtt 19849067  T
Q  238 tttcctcataaa 249  Q
    ||||||||||||    
T  19849068 tttcctcataaa 19849079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 20036843 - 20036632
Alignment:
Q  41 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatag---gaaacaagg 137  Q
    |||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||||  | ||| |||||||| ||||||||  ||    |||||| ||    
T  20036843 ttggtgatcctgttttcacttcacttcatgaccaagaaatgaaagagattgaagaaaagctcatcattgcaagacaacaacttactaatgcgaaacatgg 20036744  T
Q  138 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtt 237  Q
    ||||  | |||| ||| |||  ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  20036743 aggtgtggctagcacatcatactggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtt 20036644  T
Q  238 tttcctcataaa 249  Q
    ||||||||||||    
T  20036643 tttcctcataaa 20036632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 26646890 - 26647090
Alignment:
Q  40 attggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggag 139  Q
    ||||| |||||||||||| |||| ||||||||||||||||||| |||| | ||| | ||| | |||||||||||||| ||||||| ||   |||| ||      
T  26646890 attggggatcctgttttcatttcacttgaagaccaagaaatgagagaggtggaaaagaaactcatccttgcaagagagcaactttgta---aacacgg-- 26646984  T
Q  140 gtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttt 239  Q
     || | |||||||| |||||||||| |||  |||  | |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  26646985 -taaggctagaacaccattatggatcgatagtttcatggataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttt 26647083  T
Q  240 tcctcat 246  Q
    |||||||    
T  26647084 tcctcat 26647090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 19950994 - 19951212
Alignment:
Q  30 ttaccctgtcattggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttatagg 129  Q
    |||||||||  ||||||||||||||||| || | ||| |||| ||||||||||||||| ||||||||||  | ||| |||||||| |   ||||| || |    
T  19950994 ttaccctgttcttggtgatcctgttttcattacacttcaagatcaagaaatgaaagaggttgaagaaaagctcatcattgcaagacagacactttctaag 19951093  T
Q  130 aaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcgg 229  Q
    |   ||  ||||| | ||||| ||||||||||||||||| ||||   |||||||||||||||||||||||||||||| || |||| ||||||||||||      
T  19951094 actaaaacaggtatggctagagcaacattatggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcac 19951193  T
Q  230 tttatgtttttcctcataa 248  Q
    ||| |||||||||| ||||    
T  19951194 tttttgtttttcctaataa 19951212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 227
Target Start/End: Original strand, 19989403 - 19989589
Alignment:
Q  41 ttggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactttataggaaacaaggagg 140  Q
    ||||||||||||||||| || | ||| |||||||||||||||||||| | ||| |  |||||||||||| |||| | |||||||||| ||   |   ||     
T  19989403 ttggtgatcctgttttcattacacttcaagaccaagaaatgaaagaggtggaaaaggaattgatccttgaaagacagcaactttataagactaagtcagc 19989502  T
Q  141 taggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtc 227  Q
    ||   |||||||||   ||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  19989503 taatgctagaacaagggtatggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtc 19989589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 19812290 - 19812381
Alignment:
Q  170 tttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaa 261  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||    
T  19812290 ttttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaatatttggtgaaa 19812381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 19956070 - 19956173
Alignment:
Q  146 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctca 245  Q
    |||||||| || ||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||    
T  19956070 ctagaacatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctca 19956169  T
Q  246 taaa 249  Q
    ||||    
T  19956170 taaa 19956173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 19853532 - 19853599
Alignment:
Q  180 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcata 19853599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 20016319 - 20016230
Alignment:
Q  160 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 249  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| |||||||||    
T  20016319 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 20016230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 19858063 - 19858155
Alignment:
Q  151 acaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcct 243  Q
    |||||| | ||||||||| ||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||    
T  19858063 acaacagtgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcct 19858155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 19943720 - 19943805
Alignment:
Q  160 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 247  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||    
T  19943720 tggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatt--tgtttttcctcata 19943805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 19838379 - 19838476
Alignment:
Q  146 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcct 243  Q
    |||||||| || ||||||||||| ||||  | ||||||||||| ||||||||||||||||| ||||| ||||||||||||||  ||| ||||||||||    
T  19838379 ctagaacatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcct 19838476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 24840092 - 24840003
Alignment:
Q  160 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 249  Q
    ||||||||| ||||  | ||||||||||||||| |||| |||||||||||||||||||||||||||||  ||| |||||| |||||||||    
T  24840092 tggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaa 24840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 30914659 - 30914744
Alignment:
Q  176 ttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaa 261  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||  ||| |||||| ||||| |||| ||||||||||    
T  30914659 ttgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaagatttggtgaaa 30914744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 19818556 - 19818658
Alignment:
Q  159 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtg 258  Q
    |||||||||  ||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||||| ||  ||| |||||||||||||||   |||||||    
T  19818556 atggatggaaatttttattggtaaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataagaatttggtg 19818655  T
Q  259 aaa 261  Q
    |||    
T  19818656 aaa 19818658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 20046118 - 20046212
Alignment:
Q  155 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 249  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||| ||||| || ||| |||||||||||||  ||| ||||||||||||||||    
T  20046118 cattatggatggatatgttcatcgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaa 20046212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 247
Target Start/End: Original strand, 26653099 - 26653239
Alignment:
Q  107 ttgcaagagaacaactttataggaaacaaggaggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagc 206  Q
    |||||||| |||||||| |||| ||||| ||||||  | |||  ||| ||  ||| |||||| ||||  ||||  |||||||||||||||||||||| ||    
T  26653099 ttgcaagaaaacaacttaatagcaaacacggaggtgtggctaacacaccaacatgaatggatattttcattgactaaggtagtgaaattgaacatgatgc 26653198  T
Q  207 atttcttgctacttggttgtcggtttatgtttttcctcata 247  Q
    ||| |||||  ||||||||||  ||| ||||||||||||||    
T  26653199 attccttgcagcttggttgtcaatttttgtttttcctcata 26653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 20016447 - 20016356
Alignment:
Q  30 ttaccctgtcattggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaaattgatccttgcaagagaacaactt 123  Q
    ||||||||||||||| |||||||||||| | || |||||||||  | |||||  |||| | ||| | |||||||||||||||||| | ||||||    
T  20016447 ttaccctgtcattggcgatcctgttttcatctcacttgaagacacaaaaatg--agaggtagaaaacaaattgatccttgcaagacagcaactt 20016356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 22652220 - 22652119
Alignment:
Q  146 ctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctca 245  Q
    ||||| ||||||||||||||||| ||||  | ||||||||||||||||||||||||||||| || |||||||||||||||||  ||| ||||||| ||||    
T  22652220 ctagagcaacattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctca 22652121  T
Q  246 ta 247  Q
    ||    
T  22652120 ta 22652119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 22685778 - 22685697
Alignment:
Q  180 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaa 261  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||  ||| ||||||||||||||||  ||||||||||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaaattttggtgaaa 22685697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 22689773 - 22689684
Alignment:
Q  160 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 249  Q
    ||||||||||||||  | ||||| |||| |||| ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  22689773 tggatggatgttttcatcgataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 22689684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 22685899 - 22685843
Alignment:
Q  42 tggtgatcctgttttcgtttcgcttgaagaccaagaaatgaaagagattgaagaaaa 98  Q
    ||||||||||||||||  ||| ||| |||||||||||||||||||||||||| ||||    
T  22685899 tggtgatcctgttttcacttcacttcaagaccaagaaatgaaagagattgaacaaaa 22685843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 6397861 - 6397767
Alignment:
Q  155 cattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 249  Q
    |||||||||||||| | ||  | ||||||||||||||||||||||||||||| || |||||||| ||||||||  ||| || |||||||| ||||    
T  6397861 cattatggatggatatgttcatcgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaa 6397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 6398258 - 6398344
Alignment:
Q  157 ttatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcct 243  Q
    |||||||||||| | ||| |  |||||||||||||||||||||||||||| || ||||||| ||||||||   ||| ||||||||||    
T  6398258 ttatggatggatatgtttatctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttttcct 6398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 26355067 - 26354962
Alignment:
Q  138 aggtaggcctagaacaacattatggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtt 237  Q
    ||||| ||| |||| | |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||  ||| | ||||||| ||  ||| ||||    
T  26355067 aggtaagccaagaatatcattatggatggatgttttcatggataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtt 26354968  T
Q  238 tttcct 243  Q
    ||||||    
T  26354967 tttcct 26354962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 261
Target Start/End: Original strand, 9815036 - 9815138
Alignment:
Q  159 atggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtg 258  Q
    |||||||||| ||||  | || ||||||||||||||||| |||||||| ||  ||||||| ||||||||  | | ||||||  |||||||| ||||||||    
T  9815036 atggatggattttttcatcgacaaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaatctttggtg 9815135  T
Q  259 aaa 261  Q
    |||    
T  9815136 aaa 9815138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 12581424 - 12581476
Alignment:
Q  192 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctc 244  Q
    ||||||||||||||| || |||||||||||||||||  ||| |||||||||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctc 12581476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 12497241 - 12497296
Alignment:
Q  192 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 247  Q
    ||||||||||||||| || |||||||| ||||||||  ||| ||||||||||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12497296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 12521106 - 12521161
Alignment:
Q  192 aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcata 247  Q
    ||||||||||||||| || |||||||| ||||||||  ||| ||||||||||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12521161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University