View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_46 (Length: 259)
Name: NF0688_high_46
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 16064699 - 16064480
Alignment:
| Q |
31 |
ctttgagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatat |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16064699 |
ctttgagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcgaggtaatgacacctctctcttttcatat |
16064600 |
T |
|
| Q |
131 |
atttttccataaaaaatgaagtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttac |
230 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064599 |
atttttccata-aaaatgaagtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttac |
16064501 |
T |
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| Q |
231 |
atatacaaagccatattcttg |
251 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16064500 |
atatacaaagccatattcttg |
16064480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 29370063 - 29370277
Alignment:
| Q |
35 |
gagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatattt |
134 |
Q |
| |
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|||| ||||| |||| |||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| | |||||||| |||| |||||||| |
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| T |
29370063 |
gaggaactttcatgattaaatgaggtaaaagagagaaatacatatttgtttagacgaaaagctaatcgaggtaaaggaacctctctatttttatatattt |
29370162 |
T |
|
| Q |
135 |
ttccataaaaaatgaagtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatat |
234 |
Q |
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|||||| |||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |||||| ||||| |||||| ||||||||||| |||| ||| |
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| T |
29370163 |
ttccat-aaaaatgaagtgatatttatgtttataattgcttcgtatctgcatacgtgttcaagaat-cgtagttgccaagatgagtaaatgcttacgtat |
29370260 |
T |
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| Q |
235 |
acaaagccatattcttg |
251 |
Q |
| |
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|||| |||||||||| |
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| T |
29370261 |
gtaaagtcatattcttg |
29370277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 21982859 - 21982645
Alignment:
| Q |
35 |
gagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatattt |
134 |
Q |
| |
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|||| ||||| |||| |||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| | |||||||| |||| |||||||| |
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| T |
21982859 |
gaggaactttcatgattaaatgaggtaaaagagagaaatacatatttgtttagacgaaaagctaatcgaggtaaaggaacctctctatttttatatattt |
21982760 |
T |
|
| Q |
135 |
ttccataaaaaatgaagtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatat |
234 |
Q |
| |
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||||||| ||||||||||||| ||| |||||||||||| ||||||||||| |||||||| |||||| ||||| |||||| ||||||||||| |||| ||| |
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| T |
21982759 |
ttccata-aaaatgaagtgatatttatgtttataattgcttcgtatctgcatacgtgttcaagaat-cgtagttgccaagatgagtaaatgcttacgtat |
21982662 |
T |
|
| Q |
235 |
acaaagccatattcttg |
251 |
Q |
| |
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|||| |||||||||| |
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| T |
21982661 |
gtaaagtcatattcttg |
21982645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 36562547 - 36562358
Alignment:
| Q |
62 |
aaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttc-atatatttttccataaaaaatgaagtgatgtttt |
160 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36562547 |
aaagagataaagacatatttgtttggacgaaaagccaattgaggtaagggcacctctctattttttatatatttttccataaaaaatgaagtgatgttta |
36562448 |
T |
|
| Q |
161 |
tgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
250 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| | || || ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
36562447 |
tgtttataattgttttgtatctgcttacgtgtttaaaaatatgcagttgtcaagatgagtaaatgtttacatatgcaaattcatattctt |
36562358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 36545767 - 36545956
Alignment:
| Q |
62 |
aaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttc-atatatttttccataaaaaatgaagtgatgtttt |
160 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36545767 |
aaagagataaagacatatttgtttggacgaaaagccaattgaggtaagggcacctctctattttttatatatttttccataaaaaatgaagtgatgttta |
36545866 |
T |
|
| Q |
161 |
tgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
250 |
Q |
| |
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|||||||||||| || |||||||||||||||||||| |||| | || || ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
36545867 |
tgtttataattgctttgtatctgcttacgtgtttaaaaatatgcagttgtcaagatgagtaaatgtttacatatgcaaattcatattctt |
36545956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 4023394 - 4023611
Alignment:
| Q |
33 |
ttgagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatat |
132 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||||| ||||||||| |||||||||||| || |||| | ||||||||| |||| |||||| |
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| T |
4023394 |
ttgagagactttgatgactaaatgaggtgaaagagaaaaagacatatttgtttggacgaaaagctagtcgaggtgagagcacctctctatttttatatat |
4023493 |
T |
|
| Q |
133 |
ttttccataaaaaatgaagtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacat |
232 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||| || | |||| |||||||||||||||| | || ||| |||||||| ||||||||| |
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| T |
4023494 |
ttttccat-aaaaatgaagtgatgtttatgtttataattgattcacatatacttatgtgtttaagaatacgtggttgtcaagatgagtaattgtttacat |
4023592 |
T |
|
| Q |
233 |
atacaaagccatattcttg |
251 |
Q |
| |
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| ||||| || ||||||| |
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| T |
4023593 |
aagcaaagtcacattcttg |
4023611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 32008393 - 32008333
Alignment:
| Q |
35 |
gagggactttgatgactaaatgagataaaagagagaaagacgtatttgtttagacgaaaag |
95 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||| ||||||||| || |||||| |
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| T |
32008393 |
gagggactttgatgactacaagaactaaaagagagaaagacatatttgtttggatgaaaag |
32008333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 5775320 - 5775368
Alignment:
| Q |
37 |
gggactttgatgactaaatgagataaaagagagaaagacgtatttgttt |
85 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| ||||||||| |
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| T |
5775320 |
gggactttgatgactaaaataagtaaaagagagaaagacatatttgttt |
5775368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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