View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_57 (Length: 244)
Name: NF0688_high_57
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 50254161 - 50254380
Alignment:
| Q |
23 |
ctaaaatcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttcggtccagtgcatgacccggttcagtctaccaaac |
122 |
Q |
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| T |
50254161 |
ctaaaatcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttgggtccagtgcatgacccggttcagtctaccaaac |
50254260 |
T |
|
| Q |
123 |
ttatctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaacttctattacacgcttgaggatctcgttaaatcctatgcaccttc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50254261 |
ttatctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaatttctattacgcgcttgaggatctcgttaaatcctatgcaccttc |
50254360 |
T |
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| Q |
223 |
aattacatactcaatacatc |
242 |
Q |
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|||||||||||||||||||| |
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| T |
50254361 |
aattacatactcaatacatc |
50254380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 27643864 - 27643648
Alignment:
| Q |
26 |
aaatcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttcggtccagtgcatgacccggttcagtctaccaaactta |
125 |
Q |
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| T |
27643864 |
aaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccagttctgtccaccaaactta |
27643765 |
T |
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| Q |
126 |
tctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaacttctattacacgcttgaggatctcgttaaatcctatgcaccttcaat |
225 |
Q |
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| T |
27643764 |
tatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttcggt |
27643665 |
T |
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| Q |
226 |
tacatactcaatacatc |
242 |
Q |
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||||||||| ||||||| |
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| T |
27643664 |
tacatactcgatacatc |
27643648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 50247027 - 50247243
Alignment:
| Q |
26 |
aaatcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttcggtccagtgcatgacccggttcagtctaccaaactta |
125 |
Q |
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||||||| ||| ||||| ||||||||||||||||| || ||||| ||||| ||||| ||| | ||||| | ||||||| || | ||||| |||||||| |
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| T |
50247027 |
aaatcttctccatcttctcctctcacccatataacggtccaaaccggaactaaacattacatgggtccgatatatgaccccgtccggtctaacaaactta |
50247126 |
T |
|
| Q |
126 |
tctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaacttctattacacgcttgaggatctcgttaaatcctatgcaccttcaat |
225 |
Q |
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| ||||||||||||||||| | |||||||||||||||||| |||| ||||| ||||| ||||| ||||||||||||||| ||| || ||||||| || |
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| T |
50247127 |
tatgccacgaaccaccttttaacgagaatatgcctcgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgat |
50247226 |
T |
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| Q |
226 |
tacatactcaatacatc |
242 |
Q |
| |
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||||||||||||||||| |
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| T |
50247227 |
tacatactcaatacatc |
50247243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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