View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_58 (Length: 235)
Name: NF0688_high_58
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_58 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 50255099 - 50254866
Alignment:
| Q |
1 |
caatatccaattcaacattcaaaagaaaggaatgggcattattaactcttgttaggtgaaaaagatttttaacaatacataaagcagatagaaacaaacg |
100 |
Q |
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| T |
50255099 |
caatatccaattcaacattcaaaagaaaggaatgggcattattaactcttgttaggtgaaaaagatttttaacaatacataaagcagatagaaacaaacg |
50255000 |
T |
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| Q |
101 |
atattattacaagagagagataaaaataacaatgtagttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacac |
200 |
Q |
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| T |
50254999 |
atattattacaagagagagataaaaacaacaatgtagttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacac |
50254900 |
T |
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| Q |
201 |
tattaaacgtctcagcatactcaacaaaactcata |
235 |
Q |
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| T |
50254899 |
tattaaacgtctcagcatactcaa-aaaactcata |
50254866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 27643048 - 27643152
Alignment:
| Q |
120 |
ataaaaataacaatgtagttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcata |
219 |
Q |
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| T |
27643048 |
ataaaaacaacaatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcata |
27643147 |
T |
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| Q |
220 |
ctcaa |
224 |
Q |
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| T |
27643148 |
ctcaa |
27643152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 27646272 - 27646327
Alignment:
| Q |
138 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaat |
193 |
Q |
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| T |
27646272 |
ttcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaat |
27646327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 50247809 - 50247741
Alignment:
| Q |
154 |
gggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactc |
222 |
Q |
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| T |
50247809 |
gggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactc |
50247741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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