View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_high_66 (Length: 212)

Name: NF0688_high_66
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_high_66
NF0688_high_66
[»] chr2 (8 HSPs)
chr2 (33-172)||(30266325-30266465)
chr2 (33-204)||(25616854-25617027)
chr2 (31-74)||(6257770-6257813)
chr2 (57-133)||(42847959-42848035)
chr2 (67-135)||(45632365-45632433)
chr2 (31-74)||(30784878-30784921)
chr2 (60-132)||(42848602-42848674)
chr2 (31-59)||(37151916-37151944)
[»] chr6 (8 HSPs)
chr6 (33-204)||(18970530-18970699)
chr6 (35-74)||(4279092-4279131)
chr6 (35-74)||(4284352-4284391)
chr6 (33-74)||(15997538-15997579)
chr6 (33-74)||(20508615-20508656)
chr6 (33-73)||(32261204-32261244)
chr6 (33-72)||(20756414-20756453)
chr6 (34-62)||(21351005-21351033)
[»] chr1 (7 HSPs)
chr1 (33-135)||(23732882-23732984)
chr1 (33-74)||(49361980-49362021)
chr1 (33-74)||(49359643-49359684)
chr1 (34-74)||(36391358-36391398)
chr1 (33-74)||(14237386-14237427)
chr1 (33-74)||(32994026-32994067)
chr1 (37-74)||(44770385-44770422)
[»] chr8 (11 HSPs)
chr8 (38-120)||(44495085-44495167)
chr8 (30-74)||(36697683-36697727)
chr8 (33-74)||(16723687-16723728)
chr8 (30-74)||(37811170-37811214)
chr8 (33-74)||(9044190-9044231)
chr8 (33-74)||(23546149-23546190)
chr8 (33-74)||(23546909-23546950)
chr8 (33-74)||(24287617-24287658)
chr8 (33-74)||(37551003-37551044)
chr8 (113-189)||(17872882-17872961)
chr8 (91-135)||(20105016-20105060)
[»] chr5 (11 HSPs)
chr5 (35-169)||(4427876-4428010)
chr5 (37-135)||(33573260-33573359)
chr5 (37-135)||(4084712-4084811)
chr5 (57-135)||(14098370-14098448)
chr5 (57-135)||(41609534-41609612)
chr5 (33-74)||(12696487-12696528)
chr5 (33-74)||(14098500-14098541)
chr5 (33-74)||(35424270-35424311)
chr5 (57-172)||(210356-210472)
chr5 (33-63)||(26016227-26016257)
chr5 (37-74)||(11448584-11448621)
[»] chr4 (11 HSPs)
chr4 (34-135)||(5941325-5941426)
chr4 (37-135)||(50185285-50185384)
chr4 (57-143)||(49648169-49648256)
chr4 (32-74)||(49574747-49574789)
chr4 (91-172)||(24844146-24844228)
chr4 (33-74)||(19638107-19638148)
chr4 (33-74)||(43428480-43428521)
chr4 (58-173)||(51702695-51702811)
chr4 (33-72)||(21436562-21436601)
chr4 (35-74)||(33581140-33581179)
chr4 (105-170)||(50848416-50848482)
[»] chr3 (16 HSPs)
chr3 (31-204)||(20111777-20111949)
chr3 (67-170)||(1093209-1093313)
chr3 (37-135)||(46889332-46889431)
chr3 (57-135)||(37915435-37915513)
chr3 (57-135)||(49308157-49308235)
chr3 (33-74)||(29749338-29749379)
chr3 (57-173)||(53467194-53467311)
chr3 (31-74)||(47393895-47393938)
chr3 (67-135)||(50704298-50704366)
chr3 (33-73)||(54516966-54517006)
chr3 (105-135)||(26250211-26250241)
chr3 (30-72)||(54524693-54524735)
chr3 (37-74)||(24515929-24515966)
chr3 (33-74)||(36244153-36244194)
chr3 (33-74)||(40934833-40934874)
chr3 (67-135)||(36863922-36863990)
[»] chr7 (11 HSPs)
chr7 (37-135)||(42418163-42418262)
chr7 (67-132)||(42745671-42745736)
chr7 (33-74)||(19068469-19068510)
chr7 (30-74)||(43448522-43448566)
chr7 (57-135)||(9146091-9146169)
chr7 (37-133)||(32577318-32577415)
chr7 (34-74)||(29064744-29064784)
chr7 (35-74)||(14253955-14253994)
chr7 (35-74)||(14255616-14255655)
chr7 (33-74)||(19069254-19069295)
chr7 (53-133)||(12294219-12294299)
[»] scaffold1370 (1 HSPs)
scaffold1370 (33-74)||(206-247)
[»] scaffold0159 (1 HSPs)
scaffold0159 (33-74)||(28158-28199)
[»] scaffold0285 (1 HSPs)
scaffold0285 (33-74)||(17542-17583)
[»] scaffold0136 (1 HSPs)
scaffold0136 (57-133)||(23675-23751)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 30266325 - 30266465
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||   |||||||||||||||||||||||||||    
T  30266325 catttcaaatgagagcactttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacacttcagatttaattgctctttaaaaag 30266424  T
Q  133 ggt-atgtactttatcctccaccttttctcttctccactct 172  Q
    ||| ||| ||| || | ||||||||||||||||||||||||    
T  30266425 ggtcatggactgtaacatccaccttttctcttctccactct 30266465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 25616854 - 25617027
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||| |||| |||||||  |||||||||||||||||||| |||||||    
T  25616854 catttcaaatgagaggactttttaaatgagagggtgagagaaattaacttagaccgttggatttaaatcaaggcttcagatttaattgctctgtaaaaag 25616953  T
Q  133 gg--tatgtactttatcctccaccttttctcttctccactctgtttttctgtctctcacgagtagttctgtgct 204  Q
    ||   ||||| | || ||||||||| ||||||||||||||||||| || | |||||| ||||||||| ||||||    
T  25616954 gggtcatgtattgtaacctccacctcttctcttctccactctgttcttatctctctcccgagtagttttgtgct 25617027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 6257813 - 6257770
Alignment:
Q  31 gacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6257813 gacatttcaaatgagaggactttttaaatgagaaggtgagagga 6257770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 42847959 - 42848035
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagg 133  Q
    ||||||| |||||||||||||  ||| |||| | ||||||||||||  ||||||||||||||||| |||||||||||    
T  42847959 aatgagagggtgagaggaattagtttggaccattggatctaaatcaacgcttcagatttaattgcactttaaaaagg 42848035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 45632433 - 45632365
Alignment:
Q  67 tgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||||||| ||||| ||||| ||||||||||||  |||| |||||||||||| |||||||||||||    
T  45632433 tgagaggaattaatttaaaccgttggatctaaatcaacgctttagatttaattgcactttaaaaagggt 45632365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 30784878 - 30784921
Alignment:
Q  31 gacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  30784878 gacatttcaaatgagaggactttttaaatgagagggtgagagga 30784921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 42848674 - 42848602
Alignment:
Q  60 gagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    |||| ||||||| ||||| |||| |||||| | ||||||||||  ||||||||||||||||| ||||||||||    
T  42848674 gagagggtgagaagaattaatttggaccgttgaatctaaatcaacgcttcagatttaattgcactttaaaaag 42848602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 37151916 - 37151944
Alignment:
Q  31 gacatttcaaatgagaggactttttaaat 59  Q
    |||||||||||||||||||||||||||||    
T  37151916 gacatttcaaatgagaggactttttaaat 37151944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 18970699 - 18970530
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    |||||||||| ||||||||||| |||||||| | ||||||||||| |||| || ||| |||||||||||   |||||| |||||| | ||||||||||||    
T  18970699 catttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaactactctttaaaaag 18970600  T
Q  133 ggt--atgtactttatcctccaccttttctcttctccactctgtttttctgtctctcacgagtagttctgtgct 204  Q
    |||  ||||||  ||  ||||||||||||| || |||||||||   |||| |||||||||||||||||||||||    
T  18970599 ggttcatgtaccgtactctccaccttttct-ttttccactctg---ttctctctctcacgagtagttctgtgct 18970530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 4279092 - 4279131
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4279092 tttcaaatgagaggactttttaaatgagagggtgagagga 4279131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 4284391 - 4284352
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4284391 tttcaaatgagaggactttttaaatgagagggtgagagga 4284352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 15997579 - 15997538
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  15997579 catttcaaatgagaggagtttttaaatgagagggtgagagga 15997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 20508615 - 20508656
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  20508615 catttcaaatgagatgactttttaaatgagagggtgagagga 20508656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 32261244 - 32261204
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagg 73  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  32261244 catttcaaatgagatgactttttaaatgagagggtgagagg 32261204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 20756453 - 20756414
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagag 72  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  20756453 catttcaaatgagaggagtttttaaatgagagggtgagag 20756414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 21351033 - 21351005
Alignment:
Q  34 atttcaaatgagaggactttttaaatgag 62  Q
    |||||||||||||||||||||||||||||    
T  21351033 atttcaaatgagaggactttttaaatgag 21351005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 23732984 - 23732882
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    |||||||||  |||| ||||||||||||||| ||||||||||||| |||||||||||  |||||||||||   ||||||||||||||| |||||||||||    
T  23732984 catttcaaaatagagcactttttaaatgagagggtgagaggaattaatttagaccgttagatctaaatcaacacttcagatttaattgttctttaaaaag 23732885  T
Q  133 ggt 135  Q
    |||    
T  23732884 ggt 23732882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 49362021 - 49361980
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  49362021 catttcaaatgagaggagtttttaaatgagaaggtgagagga 49361980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 49359643 - 49359684
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  49359643 catttcaaatgagaggagtttttaaatgagagggtgagagga 49359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 36391398 - 36391358
Alignment:
Q  34 atttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  36391398 atttcaaatgagaggactttataaatgagagggtgagagga 36391358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 14237427 - 14237386
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  14237427 catttcaaataagagcactttttaaatgagagggtgagagga 14237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 32994067 - 32994026
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  32994067 catttcaaatgagagggttttttaaatgagagggtgagagga 32994026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 44770422 - 44770385
Alignment:
Q  37 tcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  44770422 tcaaatgagaggactttctaaatgagagggtgagagga 44770385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 44495167 - 44495085
Alignment:
Q  38 caaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattg 120  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||  |||||| |||||||||    
T  44495167 caaatgagaggagtttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacgcttcaaatttaattg 44495085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 36697683 - 36697727
Alignment:
Q  30 ggacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  36697683 ggacatttcaaatgagaggactttttaaatgagagggtgagagga 36697727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 16723687 - 16723728
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  16723687 catttcaaatgagaggacttttaaaatgagagggtgagagga 16723728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 37811170 - 37811214
Alignment:
Q  30 ggacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| |||||||||||||||| | ||||||||    
T  37811170 ggacatttcaaatgagatgactttttaaatgagaggatgagagga 37811214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 9044190 - 9044231
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||| |||||||| |||||||||||||||| ||||||||||    
T  9044190 cattttaaatgagatgactttttaaatgagagggtgagagga 9044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 23546149 - 23546190
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||| | |||||||||||| ||||||||||    
T  23546149 catttcaaatgagagggcattttaaatgagagggtgagagga 23546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 23546950 - 23546909
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||  |||||||||||||| ||||||||||    
T  23546950 catttcaaatgagagagctttttaaatgagagggtgagagga 23546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 24287658 - 24287617
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  24287658 catttcaaatgagagggttttttaaatgagagggtgagagga 24287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 37551003 - 37551044
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||| |||||||||||||| | ||||||||    
T  37551003 catttcaaatgagagggctttttaaatgagaggatgagagga 37551044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 17872882 - 17872961
Alignment:
Q  113 tttaattgctctttaaaaagggt-atgtactttatcctccaccttttctcttctc--cactctgtttttctgtctctcac 189  Q
    |||||||| ||| |||||||||| || |||  || ||||||||||||||||||||  ||||||||| |||| ||||||||    
T  17872882 tttaattggtctctaaaaagggtcatttacggtaacctccaccttttctcttctccacactctgttcttctctctctcac 17872961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 20105060 - 20105016
Alignment:
Q  91 ggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||| ||||||  |||||||||||||||| ||||||||||||||    
T  20105060 ggatcaaaatcaacgcttcagatttaattggtctttaaaaagggt 20105016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 4427876 - 4428010
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaaggg 134  Q
    |||||||||| | |||||||||||| ||| ||||||||||||| ||||||||||| | |||||||||    ||| | ||||||||||||||||||| |      
T  4427876 tttcaaatgaaaagactttttaaattagagggtgagaggaattaatttagaccgttgaatctaaatcgacactttaaatttaattgctctttaaaatgat 4427975  T
Q  135 tatgtactttatcctccaccttttctcttctccac 169  Q
    |||||||| || | ||||| |||||||||||||||    
T  4427976 tatgtactataacatccactttttctcttctccac 4428010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 33573260 - 33573359
Alignment:
Q  37 tcaaatgagaggactttttaaa-tgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    |||||||||||||| ||||||| ||||| | ||||||||||| |||||||||||  |||| ||||||  || ||||||||||||| ||||| ||||||||    
T  33573260 tcaaatgagaggacattttaaaatgagaggctgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttctttcaaaagggt 33573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 4084811 - 4084712
Alignment:
Q  37 tcaaatgagaggacttttta-aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    |||| ||||||||| ||||| ||||||| ||||||||||| | || | |||||||||||| |||| |  || ||||||| ||||| ||||||||||||||    
T  4084811 tcaagtgagaggacattttataatgagagggtgagaggaaataatgtggaccgtcggatcaaaataaacgcctcagattaaattgttctttaaaaagggt 4084712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 14098448 - 14098370
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| | ||| ||||||| |||| |||| | ||| | ||||||  |||||||||||||||||||||||||||||||    
T  14098448 aatgagaggatgacaggaattaatttggaccattggaacaaaatcaacgcttcagatttaattgctctttaaaaagggt 14098370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 41609534 - 41609612
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| | ||||||||||| ||||  ||| | ||||| ||||||  || ||||||||||||||||||||||||||||    
T  41609534 aatgagaggatgagaggaattaatttgaaccattggatcaaaatcaacgcatcagatttaattgctctttaaaaagggt 41609612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 12696487 - 12696528
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||| |||||||||||||||| ||||||||||    
T  12696487 catttcaaatgagatgactttttaaatgagagggtgagagga 12696528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 14098500 - 14098541
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  14098500 cattttaaatgagaggactttttaaatgagagggtgagagga 14098541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 35424270 - 35424311
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  35424270 catttcaaatgagaggacttttaaaatgagagggtgagagga 35424311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 210472 - 210356
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactttatcctccacct 155  Q
    ||||||| | ||| ||||||| || | |||| | ||||| ||||||  |||| |||||||||||||||||||||||||| ||| |||  | |||| ||||    
T  210472 aatgagaggatgaaaggaattaatctggaccattggatcaaaatcaacgctttagatttaattgctctttaaaaagggtcatgcactacaacctctacct 210373  T
Q  156 tttctcttctccactct 172  Q
    ||  |||||||||||||    
T  210372 ttcatcttctccactct 210356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 26016257 - 26016227
Alignment:
Q  33 catttcaaatgagaggactttttaaatgaga 63  Q
    |||||||||||||||||||||||||||||||    
T  26016257 catttcaaatgagaggactttttaaatgaga 26016227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 11448621 - 11448584
Alignment:
Q  37 tcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  11448621 tcaaatgagaggacttcttaaatgagagggtgagagga 11448584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 5941426 - 5941325
Alignment:
Q  34 atttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagg 133  Q
    |||| |||||||||||||||||||| |||| ||||||||||||| || ||||| ||  |||||||||||  ||||||||| ||||||||| |||||||||    
T  5941426 attttaaatgagaggactttttaaacgagagggtgagaggaattaatatagacagttagatctaaatcaacgcttcagatataattgctcattaaaaagg 5941327  T
Q  134 gt 135  Q
    ||    
T  5941326 gt 5941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 50185285 - 50185384
Alignment:
Q  37 tcaaatgagaggactttttaaa-tgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    |||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  |||| ||||||  || ||||||||||||| ||||| ||||||||    
T  50185285 tcaaatgagaggacattttaaaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttctttcaaaagggt 50185384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 49648256 - 49648169
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactt 143  Q
    ||||||| ||||||||||||| |||| |||| |   ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||    
T  49648256 aatgagagggtgagaggaattaatttggaccatttaatctaaatcaacgcttcagatttaattgcactttaaaaagggtcatgtactt 49648169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 49574789 - 49574747
Alignment:
Q  32 acatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  49574789 acatttcaaatgagaggactttttaaatgagagggtgagagga 49574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 24844146 - 24844228
Alignment:
Q  91 ggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactttatcctccaccttttctcttctccactct 172  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||| ||| |||  | |||| ||||||  |||||||||||||    
T  24844146 ggatcaaaatcaacgcttcagatttaattgctctttaaaaagggtcatgcactacaacctctacctttcatcttctccactct 24844228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 19638107 - 19638148
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  19638107 catttcaaatgagaggaatttttaaatgagagggtgagagga 19638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 43428480 - 43428521
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  43428480 cattttaaatgagaggactttttaaatgagagggtgagagga 43428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 51702695 - 51702811
Alignment:
Q  58 atgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactttatcctccacctt 156  Q
    |||||| | ||||||||||| || | || | | ||||| ||||||  | ||||||||||||||||||||||||||||| ||| |||  | |||| |||||    
T  51702695 atgagaggatgagaggaattaatctggatcattggatcaaaatcaacgtttcagatttaattgctctttaaaaagggtcatgcactacaacctctacctt 51702794  T
Q  157 ttctcttctccactctg 173  Q
    |  ||||||||||||||    
T  51702795 tcatcttctccactctg 51702811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 21436562 - 21436601
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagag 72  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  21436562 catttcaaatgagaggagtttttaaatgagagggtgagag 21436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 33581179 - 33581140
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  33581179 tttcaaatgagaggagtttttaaatgagagggtgagagga 33581140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 50848416 - 50848482
Alignment:
Q  105 gcttcagatttaattgctctttaaaaagggt-atgtactttatcctccaccttttctcttctccact 170  Q
    ||||||||||||| ||||||||||||||||| ||  |||  |||||||||||||  |||||||||||    
T  50848416 gcttcagatttaactgctctttaaaaagggtcatacactacatcctccacctttcatcttctccact 50848482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 20111949 - 20111777
Alignment:
Q  31 gacatttcaaatgagaggactttttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaa 130  Q
    |||||||||||| ||||||||||| |||||||| | ||||||||||| |||| || ||| |||||||||||   |||||| |||||||| ||||||||||    
T  20111949 gacatttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaattactctttaaaa 20111850  T
Q  131 aggg---tatgtactttatcctccaccttttctcttctccactctgtttttctgtctctcacgagtagttctgtgct 204  Q
    | ||   |||||||  ||  ||||||||||||| || ||||||   || |||| |||||||||||||||| ||||||    
T  20111849 aagggtttatgtaccgtactctccaccttttct-ttttccact---ttgttctctctctcacgagtagttatgtgct 20111777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 1093209 - 1093313
Alignment:
Q  67 tgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactttatcctccaccttttctcttct 165  Q
    ||||||||||| ||||||||||| ||||||||||||  | ||||||| | ||||||||||||||||||| ||| |||  |||||||||||||  ||||||    
T  1093209 tgagaggaattaatttagaccgttggatctaaatcaacgtttcagatgttattgctctttaaaaagggtcatgcactacatcctccacctttcatcttct 1093308  T
Q  166 ccact 170  Q
    |||||    
T  1093309 ccact 1093313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 46889332 - 46889431
Alignment:
Q  37 tcaaatgagaggacttttta-aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    |||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||  |||| ||||||   | ||||||||||||| ||||| ||||||||    
T  46889332 tcaaatgagaggacattttataatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacacctcagatttaattgttctttcaaaagggt 46889431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 37915435 - 37915513
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| | ||||||||||| || |||||| | ||||| ||||||  |||||||||||||||| ||||||||||||||    
T  37915435 aatgagaggatgagaggaattaatctagaccattggatcaaaatcaacgcttcagatttaattgttctttaaaaagggt 37915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 49308157 - 49308235
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| | ||||||||||| |||| || | | ||||| ||||||  |||||||||||||||||||||||||||||||    
T  49308157 aatgagaggatgagaggaattaatttggatcattggatcaaaatcaacgcttcagatttaattgctctttaaaaagggt 49308235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 29749379 - 29749338
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  29749379 catttcaaatgagaggactttttaaatgagagggtgagagga 29749338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 53467311 - 53467194
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt-atgtactttatcctccacct 155  Q
    ||||||| | ||||||||||| || | || | | ||||| ||||||  |||||| |||||||||||||||||||||||| ||| |||  | |||| ||||    
T  53467311 aatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgcttcaaatttaattgctctttaaaaagggtcatgcactacaacctctacct 53467212  T
Q  156 tttctcttctccactctg 173  Q
    ||| ||||||||||||||    
T  53467211 tttatcttctccactctg 53467194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 47393895 - 47393938
Alignment:
Q  31 gacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  47393895 gacatttcaaatgagaggactttataaatgagagggtgagagga 47393938  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 50704366 - 50704298
Alignment:
Q  67 tgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||||||| || | |||| | ||||| ||||||  |||||||||||||||||| ||||||||||||    
T  50704366 tgagaggaattaatctggaccattggatcaaaatcaacgcttcagatttaattgctttttaaaaagggt 50704298  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 54516966 - 54517006
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagg 73  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  54516966 catttcaaatgagaggagtttttaaatgagagggtgagagg 54517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 26250211 - 26250241
Alignment:
Q  105 gcttcagatttaattgctctttaaaaagggt 135  Q
    |||||||||||||||||||||||||||||||    
T  26250211 gcttcagatttaattgctctttaaaaagggt 26250241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 54524735 - 54524693
Alignment:
Q  30 ggacatttcaaatgagaggactttttaaatgagaaggtgagag 72  Q
    ||||||||||||||||||||||||| |||||||| | ||||||    
T  54524735 ggacatttcaaatgagaggacttttaaaatgagaggatgagag 54524693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 24515966 - 24515929
Alignment:
Q  37 tcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  24515966 tcaaatgagaggacttcttaaatgagagggtgagagga 24515929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 36244194 - 36244153
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||| || ||||||||||||| ||||||||||    
T  36244194 catttcaaatgagatgattttttaaatgagagggtgagagga 36244153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 40934874 - 40934833
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||| ||||||| |||||||||||| ||||||||||    
T  40934874 catttcaaataagaggacattttaaatgagagggtgagagga 40934833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 36863922 - 36863990
Alignment:
Q  67 tgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| ||| |||||||| || ||||||||||||  |  ||||||| || |||||||||||||||||    
T  36863922 tgagagggattaatttagactgttggatctaaatcaacggctcagattaaaatgctctttaaaaagggt 36863990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 42418262 - 42418163
Alignment:
Q  37 tcaaatgagaggactttttaaa-tgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    |||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  |||| ||||||  || ||||||||||||| ||||| ||||||||    
T  42418262 tcaaatgagaggacattttaaaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttctttcaaaagggt 42418163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 42745671 - 42745736
Alignment:
Q  67 tgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaag 132  Q
    ||||||||||| |||| |||||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  42745671 tgagaggaattaatttggaccgttggatctaaatcaacgcttcagatttaattgcactttaaaaag 42745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 19068469 - 19068510
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  19068469 catttcaaatgagaggactttttaaatgagagggtgagagga 19068510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 43448566 - 43448522
Alignment:
Q  30 ggacatttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  43448566 ggacatttcaaatgagaggaccttttaaatgagagggtgagagga 43448522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 9146091 - 9146169
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagggt 135  Q
    ||||||| | ||||||||||| |||| |||  | ||||| ||||||  |||||||||||||||| ||||||||||||||    
T  9146091 aatgagaggatgagaggaattaatttggacatttggatcaaaatcaacgcttcagatttaattgttctttaaaaagggt 9146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 32577415 - 32577318
Alignment:
Q  37 tcaaatgagaggacttttta-aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagg 133  Q
    |||| |||||||| || ||| ||||||| | ||||||||||| || |  ||| | ||||| ||||||  |||||||||||||||||||||||||||||    
T  32577415 tcaagtgagaggagttgttagaatgagaggatgagaggaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctctttaaaaagg 32577318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 29064744 - 29064784
Alignment:
Q  34 atttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29064744 atttcaaatgagaggagtttttaaatgagagggtgagagga 29064784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 14253955 - 14253994
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  14253955 tttcaaatgagatgactttttaaatgagagggtgagagga 14253994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 14255655 - 14255616
Alignment:
Q  35 tttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  14255655 tttcaaatgagatgactttttaaatgagagggtgagagga 14255616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 19069295 - 19069254
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  19069295 catttcaaaagagatgactttttaaatgagagggtgagagga 19069254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 12294299 - 12294219
Alignment:
Q  53 tttaaatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagg 133  Q
    ||||||||||| | ||||| ||||| || |  ||| | ||||| ||||||  |||||| ||||||||||||||||||||||    
T  12294299 tttaaatgagaggatgagatgaattaatctgaaccattggatcaaaatcaacgcttcatatttaattgctctttaaaaagg 12294219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 206 - 247
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  206 catttcaaatgagaggactttttaaatgagaggatgagagga 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 28158 - 28199
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  28158 catttcaaataagaggactttttaaatgagagggtgagagga 28199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 17583 - 17542
Alignment:
Q  33 catttcaaatgagaggactttttaaatgagaaggtgagagga 74  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  17583 catttcaaatgagaggattttttaaatgagaggatgagagga 17542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 23751 - 23675
Alignment:
Q  57 aatgagaaggtgagaggaattgatttagaccgtcggatctaaatcattgcttcagatttaattgctctttaaaaagg 133  Q
    ||||||| | ||||||||||| || |||| | | ||||| ||||||  |||||||||||||||  ||||||||||||    
T  23751 aatgagaggatgagaggaattaatatagatcattggatcaaaatcaacgcttcagatttaattattctttaaaaagg 23675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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