View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_67 (Length: 206)
Name: NF0688_high_67
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_67 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 14812456 - 14812310
Alignment:
| Q |
28 |
aagaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgag |
127 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14812456 |
aagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctaag |
14812357 |
T |
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| Q |
128 |
ctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
174 |
Q |
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| T |
14812356 |
ctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
14812310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 15259451 - 15259305
Alignment:
| Q |
28 |
aagaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgag |
127 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15259451 |
aagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctaag |
15259352 |
T |
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| Q |
128 |
ctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
174 |
Q |
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| T |
15259351 |
caaggagatgatccaaaactaaattttcaggttctgaccacaggttc |
15259305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 14805009 - 14804890
Alignment:
| Q |
55 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
154 |
Q |
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| T |
14805009 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
14804910 |
T |
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| Q |
155 |
caggttctgaccacaggttc |
174 |
Q |
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| T |
14804909 |
cacgttttgaccacaggttc |
14804890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 15252003 - 15251884
Alignment:
| Q |
55 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
154 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||| | || |
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| T |
15252003 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
15251904 |
T |
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| Q |
155 |
caggttctgaccacaggttc |
174 |
Q |
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| T |
15251903 |
cacgttttgaccacaggttc |
15251884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 17521724 - 17521870
Alignment:
| Q |
28 |
aagaatatgtggatacaaatttgcactattagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgag |
127 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521724 |
aagagtatgtggttacaaatttgcactattagagataatggttatggatataaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgag |
17521823 |
T |
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| Q |
128 |
ctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
174 |
Q |
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| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17521824 |
cgaggtgatgatccaaaactaagttttcaggttctgaccacaggttc |
17521870 |
T |
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