View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_high_7 (Length: 467)
Name: NF0688_high_7
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 96 - 463
Target Start/End: Complemental strand, 40859103 - 40858717
Alignment:
| Q |
96 |
ctaggtacatacgcaaaagacatttttctaaagtaaaaagaaaaagaatgatcttatatttcagagaaatgtatctctttatgcgtatacatttaatcct |
195 |
Q |
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| T |
40859103 |
ctaggcacatacgcaaaagac-tttttctaaagtaaaaagaaaaagaatgattttatatttcagagatatgtatctctttatgcgtatacatttactcat |
40859005 |
T |
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| Q |
196 |
gtgatcatgcaagatttgttcgaagaataatgtggtctatctaactatgtaaggggacaa--------------------actacatggtaaattcatca |
275 |
Q |
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| T |
40859004 |
gtgatcatgcaagatttgttggaagaataacgtggtctatctaactatgtaaggggacaattccatcattaaaggaacaaactacatggtgaattcatca |
40858905 |
T |
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| Q |
276 |
aagatgagttgttctagatcacaacctttgttttatctcctaagcatgatatgactataaatagtggctcttcaagatcactttatacagccgttgatta |
375 |
Q |
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| T |
40858904 |
aagatgagttgttctagatcacaacctttattttatctcctaagcatgatatgactataaatagtggctcttcaagatcactttatacagccgttgatta |
40858805 |
T |
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| Q |
376 |
tagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacgcctttgcttcta |
463 |
Q |
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| T |
40858804 |
tagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacgcctttgattcta |
40858717 |
T |
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