View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_11 (Length: 468)

Name: NF0688_low_11
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_11
NF0688_low_11
[»] chr2 (27 HSPs)
chr2 (1-468)||(39472369-39472835)
chr2 (3-253)||(39138756-39139024)
chr2 (1-187)||(39153170-39153356)
chr2 (1-182)||(39216768-39216949)
chr2 (1-148)||(44895031-44895178)
chr2 (8-146)||(39380420-39380558)
chr2 (1-170)||(39371228-39371397)
chr2 (8-159)||(39396565-39396716)
chr2 (8-158)||(39421100-39421250)
chr2 (8-173)||(39223829-39223994)
chr2 (8-172)||(39196410-39196574)
chr2 (7-148)||(39478219-39478359)
chr2 (8-144)||(39412957-39413093)
chr2 (8-105)||(39205709-39205806)
chr2 (8-114)||(39099705-39099811)
chr2 (8-172)||(39387394-39387558)
chr2 (8-148)||(39425457-39425597)
chr2 (7-179)||(39604433-39604605)
chr2 (336-465)||(39139108-39139235)
chr2 (30-184)||(2362819-2362973)
chr2 (270-321)||(39139074-39139125)
chr2 (8-74)||(44624900-44624966)
chr2 (8-148)||(39493363-39493503)
chr2 (132-174)||(39452266-39452308)
chr2 (266-319)||(39153416-39153469)
chr2 (1-69)||(39188757-39188825)
chr2 (344-460)||(39452502-39452616)
[»] chr7 (3 HSPs)
chr7 (3-198)||(19809013-19809210)
chr7 (270-321)||(19809331-19809382)
chr7 (216-253)||(19809244-19809281)
[»] chr5 (2 HSPs)
chr5 (8-172)||(33562407-33562571)
chr5 (36-124)||(17060792-17060880)
[»] chr8 (2 HSPs)
chr8 (8-114)||(45343083-45343189)
chr8 (8-113)||(44730233-44730338)
[»] chr6 (1 HSPs)
chr6 (12-170)||(16114489-16114647)
[»] chr3 (1 HSPs)
chr3 (3-124)||(51576098-51576219)
[»] chr4 (1 HSPs)
chr4 (8-111)||(33152230-33152333)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 39472835 - 39472369
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39472835 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 39472736  T
Q  101 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggtttggtcagtcacctgtatctcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39472735 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggtttggtcagtcacctgtatctcttt 39472636  T
Q  201 ttggtatgttacatgtatgattatcaaatccatattgcatttttggatcttattatgtcttgtatgtgcaaactgtgaacttatctatattgatagaatg 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39472635 ttggtatgttacatgtatgtttatcaaatccatattgcatttttggatcttattatgtcttgtgtgtgcaaactgtgaacttatctatattgatagaatg 39472536  T
Q  301 ttgattacatgtgtaactcttttttgaaggaaggaattacatttgtaactcttatgaggtttgttatggatattctctaaaatccaaattgccaagtgtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39472535 ttgattacatgtgtaactcttttttgaaggaaggaattacatttgtaactcttatgaggtttgttatggatattctctaaaatccaaattg-caagtgtt 39472437  T
Q  401 agctgctgatgcttgagaaagaaattaaataaaacatatttgtgtcattgtacaattgttattgaata 468  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39472436 agctgctgatgcttgagaaaaaaattaaataaaacatatttgtgtcattgtacaattgttattgaata 39472369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 39138756 - 39139024
Alignment:
Q  3 tggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagca 102  Q
    |||| ||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  39138756 tggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcacatttgttgctcagca 39138855  T
Q  103 caagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggta--ttttaatttagatatggtttggtcagtcacctgtatctct-- 198  Q
    ||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| ||||||||      
T  39138856 caagacagctgtggaactgtttaagaccctgggttttgcaaataaactttcaggtatgttttaatttagacatggtttggtcagtcaccggtatctctcc 39138955  T
Q  199 -------------ttttggtatgttaca-tgtatgattatcaaatccatattgcatttttggatcttat 253  Q
                 ||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||    
T  39138956 ttttgtctcaatgttttggtattttacattatatgtttatcaaatccatattgcatttttggatcttat 39139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 39153170 - 39153356
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 100  Q
    |||||| |||||||||||||||||| ||||||| ||||||| |||| |||||||||| ||| ||||||||||||||||||| || ||||||||||||||     
T  39153170 tttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgctcaa 39153269  T
Q  101 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggtttggtcagtca 187  Q
    |||||||  ||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||| ||| ||||||||||||    
T  39153270 cacaagactgctgtggaactatttcggaccctgggttttgcaaataaagtttctggtatgttaatttagacatgctttggtcagtca 39153356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 39216768 - 39216949
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 100  Q
    |||||| ||||| |||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||| || |||| ||||||||||    
T  39216768 tttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgctcag 39216867  T
Q  101 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggtttggtc 182  Q
    |||||||||||| | |||||||||  |||| ||||||||||||||||| |||| ||||| |||||||||| ||| |||||||    
T  39216868 cacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttggtc 39216949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 44895178 - 44895031
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 100  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||  ||||| |||||||| || |||||||||||||||    
T  44895178 tttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaaggcgaagttttggagctttttgcatttgttgctcag 44895079  T
Q  101 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaa 148  Q
    |||||||||||||||||||| ||||||||| | ||||||||| |||||    
T  44895078 cacaagatagctgtggaactttttcggaccctcggttttgcacataaa 44895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 39380558 - 39380420
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||| || ||||| ||||||||||||||||    
T  39380558 gttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaagatgaaattttggagctttttgcattggttgctcagcacaaga 39380459  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaata 146  Q
    ||||| ||||  |||||||| || |||||||||||||||    
T  39380458 tagctatggagatgtttcgggccctgggttttgcaaata 39380420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 39371228 - 39371397
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcag 100  Q
    |||||| ||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||| | |||||||| || |||||||||||| ||    
T  39371228 tttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgttgctgag 39371327  T
Q  101 cacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttaga 170  Q
    |||||||||||| |||| |||||| | ||| |||||||||| || |||  ||| ||||| ||||| ||||    
T  39371328 cacaagatagctatggagctgtttggaaccatgggttttgccaacaaagcttctggtatgttaatgtaga 39371397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 39396716 - 39396565
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||||||| |  |||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||  ||||||||||||||||    
T  39396716 gttcttggttttttgttgcttttgtcaatttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgctcagcacaaga 39396617  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtat 159  Q
     |||| |||| ||||||  |||| ||||||||||||||||| |||| |||||    
T  39396616 cagctatggagctgtttgagaccctgggttttgcaaataaagtttctggtat 39396565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 39421250 - 39421100
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||| ||||||||||||||||||||||||||  ||||| |||||| |||  ||||||||||||| |||||||| || ||||||||||||||||||||||    
T  39421250 gttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgctcagcacaaga 39421151  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggta 158  Q
    |||| || ||  |||||  |||| ||||||||||||||||| |||| ||||    
T  39421150 tagcagttgagttgtttgagaccctgggttttgcaaataaagtttctggta 39421100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 39223829 - 39223994
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||| |||||||||||||||||  |||| || || ||||||||||||| |||||| |    
T  39223829 gttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagatgaagttctggatctttttgcatttgttgctctgcacaaaa 39223928  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatat 173  Q
    | |||||||| |||||| |   | ||||||||||||| | | |||| ||||| |||||||||||||    
T  39223929 ttgctgtggagctgtttggatgcctgggttttgcaaacagagtttctggtatgttaatttagatat 39223994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 39196574 - 39196410
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||| ||||| |||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| || ||||||||||||| | |||| |    
T  39196574 gttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgaacaata 39196475  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagata 172  Q
    | || ||||| |||||| | | | ||||||||||||| | | |||| |||||  |||||||||||    
T  39196474 ttgcggtggagctgtttggaagcctgggttttgcaaacagagtttctggtatgataatttagata 39196410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 39478359 - 39478219
Alignment:
Q  7 agttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaag 106  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||| |||||| |||||| | || |||| ||||||||| ||||||    
T  39478359 agttcttgattttctactgcttttgtcaatttatggattgcttacttctttcgaagaaggtgaagttttggag-tttttgcatctgttgctcaacacaag 39478261  T
Q  107 atagctgtggaactgtttcggaccttgggttttgcaaataaa 148  Q
    | |||| ||||  |||||  |||| ||||||| |||||||||    
T  39478260 acagctatggagttgtttgagaccctgggtttcgcaaataaa 39478219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 39413093 - 39412957
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||| |||||||  ||||||||||| ||| || |||| |||||| ||| |||||||||||| |||||||||| || |||||||||||||| |||||||    
T  39413093 gttcttagttttctgttgcttttgtcagtttgtggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgctcaacacaaga 39412994  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaa 144  Q
    |||||| | | |||||| | ||| |||||||||||||    
T  39412993 tagctgcgaagctgtttggaaccctgggttttgcaaa 39412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 39205806 - 39205709
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaa 105  Q
    |||||||||||||||||||||||||| |||||| ||||||||  |||||||||| |||||||||| || ||| | || ||||||||||||| ||||||    
T  39205806 gttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagatgaagttttcgagattttggcatttgttgctctgcacaa 39205709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 39099705 - 39099811
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||||||||||||||| ||| ||||||||||| |||||  | |||||||||||||||||||||| ||  |||| || |  |||| ||||||||||||||    
T  39099705 gttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttttgggtttgctgctcagcacaaga 39099804  T
Q  108 tagctgt 114  Q
    |||||||    
T  39099805 tagctgt 39099811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 39387558 - 39387394
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||||||||| |||||||||||||||||||   |||||  || |||||| ||||||||||| |||||||| || ||||||||||||  |||| | |    
T  39387558 gttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgctatgcacgaaa 39387459  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagata 172  Q
    | |||||||| || ||| | |   ||||||||||||| | | |||||||||| ||  ||||||||    
T  39387458 ttgctgtggagctatttggaagtctgggttttgcaaacagagtttcaggtatgtttttttagata 39387394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 39425597 - 39425457
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||||||||||||||| ||| |||||||||||| | || || ||||||| || ||||| ||||| ||| |||| |||| | ||||| ||||||||||      
T  39425597 gttcttggttttctacttcttctgtcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaact 39425498  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaa 148  Q
    ||||||| || |||||| || || ||||||||||| |||||    
T  39425497 tagctgtagagctgtttggggccatgggttttgcagataaa 39425457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 39604433 - 39604605
Alignment:
Q  7 agttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaag 106  Q
    |||||| ||||||||||| ||| |||||||||||| ||||  | ||||||| |||||||||||||| ||  |||| ||||  |||| ||||||| |||||    
T  39604433 agttctgggttttctactccttgtgtcaatttatggattggctccttctttcgatgaagatgaagttttaaagcttttcgagtttgctgctcaggacaag 39604532  T
Q  107 atagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggtttg 179  Q
    |||||||| || |||||| | ||  ||||||||||  |||||  ||| ||||| ||| |||||| ||| ||||    
T  39604533 atagctgtagagctgtttggaactctgggttttgccgataaagcttctggtatgttagtttagaaatgttttg 39604605  T

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Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 465
Target Start/End: Original strand, 39139108 - 39139235
Alignment:
Q  336 attacatttgtaactcttatgaggtttgttatggatattctctaaaatccaaattgccaagtgttagctgctgatgcttgagaaagaaattaaataaaac 435  Q
    ||||||| |||||||||||||||||||||||||||| ||||||  |||||| ||||   ||||||| ||  |||||||||||||| |||||| ||  |||    
T  39139108 attacatgtgtaactcttatgaggtttgttatggatcttctcttgaatccatattg-ttagtgttatctcttgatgcttgagaaa-aaattatatgcaac 39139205  T
Q  436 atatttgtgtcattgtacaattgttattga 465  Q
    |||||| ||| ||| ||||| |||| ||||    
T  39139206 atatttatgtgattatacaaatgttcttga 39139235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 2362819 - 2362973
Alignment:
Q  30 tgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctgtggaactgtttcggac 129  Q
    |||||||||||| |||| || ||||||| |||||||||||| | ||  |||| || |  |||| |||||| ||||||||| |||| || |||||| ||||    
T  2362819 tgtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgtttgggac 2362918  T
Q  130 cttgggttttgcaaataaactttcaggtattttaatttagatatggtttggtcag 184  Q
      ||||||| ||| ||||| |||| ||||| ||| |||||| ||| |||| ||||    
T  2362919 tatgggtttggcacataaagtttctggtatgttagtttagaaatgttttgctcag 2362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 39139074 - 39139125
Alignment:
Q  270 aaactgtgaacttatctatattgatagaatgttgattacatgtgtaactctt 321  Q
    ||||||||||||||   | |||||||||||||||||||||||||||||||||    
T  39139074 aaactgtgaacttaaagaaattgatagaatgttgattacatgtgtaactctt 39139125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 44624900 - 44624966
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtct 74  Q
    ||||| || |||||| || ||||||| ||||||| ||||| ||||| ||||||||||||||||||||    
T  44624900 gttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatgaagtct 44624966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 39493503 - 39493363
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||| ||||||||||| ||| |||||||||||| | || || | ||||| ||||| ||||| || ||  |||| || | | ||||| |||||||||| |    
T  39493503 gttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaaca 39493404  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaa 148  Q
    | | |||||| |||||| || || ||||||||||| |||||    
T  39493403 ttgttgtggagctgtttggggccatgggttttgcagataaa 39493363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 39452266 - 39452308
Alignment:
Q  132 tgggttttgcaaataaactttcaggtattttaatttagatatg 174  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  39452266 tgggttttgcaaataaattttctggtatgttaatttagatatg 39452308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 39153416 - 39153469
Alignment:
Q  266 gtgcaaactgtgaacttatctatattgatagaatgttgattacatgtgtaactc 319  Q
    ||||| |||||||||| ||  | |||||||||||||||||||| ||||||||||    
T  39153416 gtgcacactgtgaactaatagaaattgatagaatgttgattacttgtgtaactc 39153469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39188825 - 39188757
Alignment:
Q  1 tttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatga 69  Q
    |||||| ||||||||||||||||| ||| | ||||||||||  ||| || |||||||  ||||||||||    
T  39188825 tttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatga 39188757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 39452502 - 39452616
Alignment:
Q  344 tgtaactcttatgaggtttgttatggatattctctaaaatccaaattgccaagtgttagctgctgatgcttgagaaagaaattaaataaaacatatttgt 443  Q
    |||||||||||| ||||||||||||||| |||||| ||||  | |||| |||  |||||||  ||||||||| |||| |||||| ||  | |||||||||    
T  39452502 tgtaactcttattaggtttgttatggatcttctcttaaattaatattg-caaccgttagctattgatgcttgggaaa-aaattatattcatcatatttgt 39452599  T
Q  444 gtcattgtacaattgtt 460  Q
    || | ||||||| ||||    
T  39452600 gtgactgtacaaatgtt 39452616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 19809013 - 19809210
Alignment:
Q  3 tggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagca 102  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19809013 tggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcgcatttgttgctcagca 19809112  T
Q  103 caagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggta--ttttaatttagatatggtttggtcagtcacctgtatctct 198  Q
    ||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||  |||||||    
T  19809113 caagacagccgtggaactgtttcagaccctgggttttgcaaataaactttcaggtatgttttaatttagatatggtctggtcagtcaccgatatctct 19809210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 19809331 - 19809382
Alignment:
Q  270 aaactgtgaacttatctatattgatagaatgttgattacatgtgtaactctt 321  Q
    |||||||| ||||||  | |||||||||||||||||||||||||||||||||    
T  19809331 aaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactctt 19809382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 19809244 - 19809281
Alignment:
Q  216 tatgattatcaaatccatattgcatttttggatcttat 253  Q
    |||| |||||||||||||||||||||||||||||||||    
T  19809244 tatgtttatcaaatccatattgcatttttggatcttat 19809281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 33562407 - 33562571
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||||||||||||  ||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| || ||||||||||||| |||||| |    
T  33562407 gttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgctctgcacaaaa 33562506  T
Q  108 tagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagata 172  Q
    | || ||||| ||||||   | | ||||||||||||| | | |||| ||||| ||||||||||||    
T  33562507 ttgccgtggagctgtttgaaagcctgggttttgcaaacagagtttctggtatgttaatttagata 33562571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 17060792 - 17060880
Alignment:
Q  36 tttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagctgtggaactgttt 124  Q
    |||||| |||| |||||| ||||||| |||||||||||||||| || || |||| ||||||| ||||||||||| ||||||| ||||||    
T  17060792 tttatggattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctgagcacaagatatctgtggagctgttt 17060880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 45343083 - 45343189
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| || | || ||||| |||||||||||    
T  45343083 gttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttgttcagcacaaga 45343182  T
Q  108 tagctgt 114  Q
    || ||||    
T  45343183 tatctgt 45343189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 44730233 - 44730338
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||| || |||||| || ||||| | ||||||  |||||||||||  ||||||| |||||||||||  ||||| | ||||| ||||| | | |||||||    
T  44730233 gttctcggatttctattgattttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaaga 44730332  T
Q  108 tagctg 113  Q
    ||||||    
T  44730333 tagctg 44730338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 16114489 - 16114647
Alignment:
Q  12 ttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaagatagc 111  Q
    |||||||| | |||||||||||| |||||| |||||| |||| ||| ||| ||   ||||| |||||||| || |||| ||||||||||||||||| ||     
T  16114489 ttggttttatgctgcttttgtcagtttatggattgctaacttatttcgataaatgcgaagttttggagctttttgcatctgttgctcagcacaagacagt 16114588  T
Q  112 tgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttaga 170  Q
    | |||| ||||||  |||| | |||||||||||||||  ||| ||||  ||||||||||    
T  16114589 tatggagctgtttgagaccctcggttttgcaaataaagcttctggtacgttaatttaga 16114647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 51576098 - 51576219
Alignment:
Q  3 tggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagca 102  Q
    |||| |||||||||| ||| || ||| |||||||||||| |||| || ||| ||||||| |||||||| | ||| ||   || | |||||||||||||||    
T  51576098 tggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagatgaaattttgaagtattttggatttgttgctcagca 51576197  T
Q  103 caagatagctgtggaactgttt 124  Q
    ||| ||||| || || ||||||    
T  51576198 caaaatagcagtagagctgttt 51576219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 33152230 - 33152333
Alignment:
Q  8 gttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttggagctcttcgcatttgttgctcagcacaaga 107  Q
    ||||| |||||||| || ||| ||||||||||||  ||| || | |||||||||||||||||||| ||  |||| || | | | |||||||| |||||||    
T  33152230 gttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaaga 33152329  T
Q  108 tagc 111  Q
    ||||    
T  33152330 tagc 33152333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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