View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0688_low_15 (Length: 438)
Name: NF0688_low_15
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 140 - 425
Target Start/End: Complemental strand, 28391859 - 28391574
Alignment:
| Q |
140 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcatt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391859 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcatt |
28391760 |
T |
|
| Q |
240 |
gctggcatgtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaatttccacaaaatttattctggacaattta |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391759 |
gctggcatgtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaatttccacaaaatttattctggacaattta |
28391660 |
T |
|
| Q |
340 |
gttactattttagtctataattagatacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391659 |
attactattttagtctataattagatacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
28391574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 28384513 - 28384351
Alignment:
| Q |
148 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcattgctggcat |
247 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
28384513 |
ctacctctcctctaaattgtggattaattggttttgttaatagaactgcttctttgtaagcaagtacttgacctgtgtctctatctctcattgttggcat |
28384414 |
T |
|
| Q |
248 |
gtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcatttcccattaa |
310 |
Q |
| |
|
| ||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
28384413 |
gcttctttgccttgtattagataatgccatgtacttgaacctgtgccattgatttctcattaa |
28384351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 302
Target Start/End: Original strand, 28411181 - 28411335
Alignment:
| Q |
148 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacctgtgtttctatctttcattgctggcat |
247 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||| || |||| |||||| |||||| |
|
|
| T |
28411181 |
ctacctctcctgtaaattgtgggttatgtggtttggttaatagaactgcttcagggtaagctaaaacttgacctgttttaacatctctcattgttggcat |
28411280 |
T |
|
| Q |
248 |
gtttctttgtcttgtatcagatattgccatgtacttgaacctgttccattcattt |
302 |
Q |
| |
|
||||||| |||||||| |||| |||||||| |||||||||| ||||| |||| |
|
|
| T |
28411281 |
ccttctttgccttgtatccgatagagccatgtagttgaacctgtgccattgattt |
28411335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 28411565 - 28411625
Alignment:
| Q |
365 |
tacctgtctttatcgagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
425 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
28411565 |
tacctgtctttattgagtctgaaaacaaatctaatttgatcaaccttaactgctggcattc |
28411625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 28383493 - 28383447
Alignment:
| Q |
379 |
gagtttgaaaacaaatctaatttgatcaacctcaattcctggcattc |
425 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||||||||| |
|
|
| T |
28383493 |
gagtttgaaaacatatctaatttgatcaacctcaactgctggcattc |
28383447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University