View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_16 (Length: 436)
Name: NF0688_low_16
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_16 |
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| [»] scaffold0031 (2 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 47649660 - 47649835
Alignment:
| Q |
38 |
aacctgtgacagactttccctttaggggtttaattccagctcctaagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcac |
137 |
Q |
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| T |
47649660 |
aacctgtgacagactttccctttaggggtttaattccagctcctaagccacgacaatatcccaatcgccctcccacaactgattcaaaagcaatattcgc |
47649759 |
T |
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| Q |
138 |
aatcacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcatctattta |
213 |
Q |
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| T |
47649760 |
aatgacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcgtctattta |
47649835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 47649940 - 47650070
Alignment:
| Q |
209 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
308 |
Q |
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| T |
47649940 |
atttatccat-ctccattgctgtttgtgcgagtcattctccataaatccttatagttgggctcctttttggtttcaggatctctctaaaagcaaattttc |
47650038 |
T |
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| Q |
309 |
atcatcacagaatataaatacatataagttat |
340 |
Q |
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| T |
47650039 |
atcatcacaaaatataaatacatgtaagttat |
47650070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 91833 - 91993
Alignment:
| Q |
53 |
ttccctttaggggtttaattccagctcctaagccacgacaatatcccgatcgctctcccacaactgattcaaaagcaatattcacaatcacatctttatc |
152 |
Q |
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| T |
91833 |
ttccctttagggttttaattccagctcccaagccacgacaatatcccgatcgctctcccacaactgatttaaaagcaatattcataattaaatctttatc |
91932 |
T |
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| Q |
153 |
agtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcatctattta |
213 |
Q |
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| T |
91933 |
agtgttcccatatccagcttctaggtgatatgaagaagcttcttcaaccctcatctattta |
91993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 92098 - 92229
Alignment:
| Q |
209 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
308 |
Q |
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|||||||||||| || ||| ||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||| |
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| T |
92098 |
atttatccattctccgttgttgtttatgtgagtcattctccataaatccttatagttgtgctccttttcagtttcaagatctctctaaaagcaaattttc |
92197 |
T |
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| Q |
309 |
atcatcacagaatataaatacatataagttat |
340 |
Q |
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| T |
92198 |
atcgtcacaaaatataaatacatataagttat |
92229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 170884 - 170753
Alignment:
| Q |
209 |
atttatccattcgccattgctgtttgtgtgagtcattctccataaatcctcatagttgggctccttttcggtttcaggatctctctaaaagcaaattttc |
308 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||| |||||||||||||||||||||||| |
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| T |
170884 |
atttatccattctccattgctgtttgtgtgagtcattctccataaatccttatagttagcctcctttttggtttcgggatctctctaaaagcaaattttc |
170785 |
T |
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| Q |
309 |
atcatcacagaatataaatacatataagttat |
340 |
Q |
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||||| || |||||||||||||||||||||| |
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| T |
170784 |
atcattgcaaaatataaatacatataagttat |
170753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 171049 - 170993
Alignment:
| Q |
150 |
atcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaaccttcat |
206 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
171049 |
atcagtgtcctcatatccagcttgtaagaaaactgaagaagtttcttcaaccttcat |
170993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 30754130 - 30754205
Alignment:
| Q |
267 |
ggctccttttcggtttcaggatctc--tctaaaagcaaattttcatcatcacagaatataaatacatataagttat |
340 |
Q |
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| T |
30754130 |
ggctccttttcagtttcacgatctctctctaaaagcatattttcatcatcacaaaatataattagatataagttat |
30754205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 30753873 - 30753951
Alignment:
| Q |
123 |
aaaagcaatattcacaatcacatctttatcagtgtccccatatccagcttgtaagtaaactgaagaagtttcttcaacc |
201 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||| || || | ||||| | ||||||| |||||||||| |
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| T |
30753873 |
aaaagcaatattcgtaatcacatctttatcggtgtccccatatctagtttctgagtaatcagaagaagcttcttcaacc |
30753951 |
T |
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