View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_18 (Length: 420)
Name: NF0688_low_18
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 37 - 394
Target Start/End: Complemental strand, 47122592 - 47122216
Alignment:
| Q |
37 |
gagtcagagaagtatatggacactacagaatacaaataatatacttttaatcacttgtttagggacttaaaaatgtannnnnnnnatttgtatggactac |
136 |
Q |
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| T |
47122592 |
gagtcagagaagtatatggacactacataatacaaataatatacttttagtcactcgtttaaggacttaaaaatgtatttttgta--ttgtatggactac |
47122495 |
T |
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| Q |
137 |
aaagtggatacaaagactaaaaacaaaattcactatatttgtag-aacccaaaactaatttaa-----------------ccaaattatgtaaaagtaga |
218 |
Q |
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| T |
47122494 |
aaaatggatacaaagattaaaaacaaaattcactatatttgtaggaacccaaaactaatttaatcttatttaaaaaagtaccaaattatgtaaaagtaga |
47122395 |
T |
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| Q |
219 |
gatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacacaactactaggaatataaacctaatacggtc-- |
316 |
Q |
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| T |
47122394 |
gatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacacaactactaggaatataaacctaatacggtcct |
47122295 |
T |
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| Q |
317 |
ctataagta-agtgatataatgatgaatgcatagagaaaaggttattgttagtaaaagaaaaagtcgacaaacctctct |
394 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47122294 |
ctataagtatagtgatataatgatgaatgcatagagaaaaggtaattgttagtaaaagaaaaagtcgacaaacctctct |
47122216 |
T |
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