View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_19 (Length: 418)
Name: NF0688_low_19
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_19 |
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| [»] scaffold1118 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 414
Target Start/End: Complemental strand, 1724 - 1337
Alignment:
| Q |
30 |
taggaaaatctaaagtgggcacttatatgttgcactttgattattctaatatcattatctatgaagcggattgaacgtgagtataaattacaaaataagc |
129 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1724 |
tagggaaatctaaagttggcacttatatgttgcactttggttattctaatatcattatctacgaagcggattgaacgtgagtataaattacaaaataagc |
1625 |
T |
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| Q |
130 |
ttgaataattaaaattagactgagaaaacgagacatgcactgtctatgtaaattagtttaacactgacattgaactaattaaattgctatatctgccagt |
229 |
Q |
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| T |
1624 |
ttgaataattaaaattagactgagaaaatgagacatgcactgtctatgtaaattagtttaacactgacattgaactaattaaattgctatatctgccagt |
1525 |
T |
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| Q |
230 |
tttgttccttctacgttcatcatttccttgcctaaagatggattaaatctgtttacttgtatagctcctaagacctgatagagtcgcttggttcgaatac |
329 |
Q |
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| T |
1524 |
tttgttccttctacgttcatcatttccttgcctaaagatggattaaatctgtttacttgtatagctcctaagacctgatagagtcgcttggttcgaatac |
1425 |
T |
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| Q |
330 |
aaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaagttgaacaggt---tattagagcatgaagagtagaataatctacc |
414 |
Q |
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| T |
1424 |
aaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaagttgaacaggttaatattagagcatgaagagtagaataatgtacc |
1337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 34 - 383
Target Start/End: Complemental strand, 6898 - 6529
Alignment:
| Q |
34 |
aaaatctaaagtgggcacttatatgttgcactttgattattctaatatcattatctatgaagcggattgaacgtgagtataaattacaaaataagcttga |
133 |
Q |
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| T |
6898 |
aaaagctaaagttggcacttagatgttgcactttgattattctaatgtcattctctatgaagcggattgaacgcgggaataaattacaaaataagcttca |
6799 |
T |
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| Q |
134 |
ataattaa---------aattagactgagaaaacgagacatgca---ctgtctatgtaaattagtttaacactgacat------tgaactaattaaattg |
215 |
Q |
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|||||||| |||||| ||| |||||| |||||| || ||||| ||||||||||||| |||||||||| | |||||||||||||| |
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| T |
6798 |
ataattaagcttttatgaattagtctgcgaaaacaagacatacagtactgtcagtgtaaattagttttacactgacatcatatgtaaactaattaaattg |
6699 |
T |
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| Q |
216 |
ctatatctgccagttttgttccttctacgttcatcatttccttgcctaaagatggattaaatctgtttacttgtatagctcctaagacctgat--agagt |
313 |
Q |
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| T |
6698 |
ccatgtctgccagttttgttccttctacgttcattatttccttgtctaaagatggattaaatccgtttacttttatagctgctaagatgggatagagagt |
6599 |
T |
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| Q |
314 |
cgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaagttgaacaggt |
383 |
Q |
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| T |
6598 |
tgcttggttcgaattcaaagcatcctcgagccgttgttctttgtgctttagaggagagagttgaacaggt |
6529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 1465 - 1354
Alignment:
| Q |
30 |
taggaaaatctaaagtgggcacttatatgttgcactttgattattctaatatcattatctatgaagcggattgaacgtgagtataaattacaaaataagc |
129 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | | |||||||||||||||||| |
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| T |
1465 |
tagggaaatctaaagttggcacttatatgttgcactttgattattctaatgtcattctctatgaagcggattgaacgcgggaataaattacaaaataagc |
1366 |
T |
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| Q |
130 |
ttgaataattaa |
141 |
Q |
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| T |
1365 |
ttgaataattaa |
1354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 14390025 - 14389951
Alignment:
| Q |
309 |
agagtcgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaagttgaacaggt |
383 |
Q |
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| T |
14390025 |
agagttgcttggttctaattcaaagtatcctcgagccgttgttctttgtgcttcagaggagaaagttgaacaggt |
14389951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 14390081 - 14390040
Alignment:
| Q |
228 |
gttttgttccttctacgttcatcatttccttgcctaaagatg |
269 |
Q |
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| T |
14390081 |
gttttgttccttctactttcattatttccttgtctaaagatg |
14390040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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