View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_20 (Length: 417)

Name: NF0688_low_20
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_20
NF0688_low_20
[»] chr2 (1 HSPs)
chr2 (30-312)||(26377116-26377398)
[»] chr3 (2 HSPs)
chr3 (238-313)||(50063925-50064000)
chr3 (246-306)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (238-308)||(33966650-33966720)
chr1 (238-306)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (238-313)||(25101044-25101119)
chr6 (238-275)||(23890001-23890038)
[»] chr5 (1 HSPs)
chr5 (246-306)||(43281148-43281208)
[»] chr4 (1 HSPs)
chr4 (240-306)||(55911195-55911260)
[»] scaffold1211 (1 HSPs)
scaffold1211 (42-106)||(1088-1152)
[»] chr8 (1 HSPs)
chr8 (252-308)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (246-306)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 26377116 - 26377398
Alignment:
Q  30 gaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcacaagaacaaaatgatt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377116 gaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcacaagaacaaaatgatt 26377215  T
Q  130 ggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaagatttgttttgggtttctaa 229  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  26377216 ggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaagatttgttttgggtttctaa 26377315  T
Q  230 tagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattcc 312  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26377316 tagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctccaccgtgcttcgacttcattcc 26377398  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 50063925 - 50064000
Alignment:
Q  238 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 313  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccg 50064000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 7227152 - 7227212
Alignment:
Q  246 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 306  Q
    |||||||||| ||||||  ||||||||||| | |||| ||||||| ||| |||||||||||    
T  7227152 gtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactt 7227212  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 33966650 - 33966720
Alignment:
Q  238 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 308  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttca 33966720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 50204531 - 50204599
Alignment:
Q  238 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 306  Q
    ||||||| ||||||| |||||||||| || ||| |||| | |||| ||||||| | |||||||||||||    
T  50204531 aggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactt 50204599  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 25101119 - 25101044
Alignment:
Q  238 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 313  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| ||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccg 25101044  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  238 aggatcgtgtgctggctcgtaggatcttacgattctac 275  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 43281208 - 43281148
Alignment:
Q  246 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 306  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactt 43281148  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 55911195 - 55911260
Alignment:
Q  240 gatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 306  Q
    ||||| ||||||| |||||||||| |||||| |||||| |||||||||||| | ||||||| |||||    
T  55911195 gatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactt 55911260  T

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Target: scaffold1211 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 1088 - 1152
Alignment:
Q  42 aacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaat 106  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||| ||||  ||||| ||| |||||||    
T  1088 aacttattgatggtagagactagattttagactagcaaatctgactgcaaagactgttgataaat 1152  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 29168612 - 29168556
Alignment:
Q  252 gctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 308  Q
    ||||||||||||  |||||  ||| |||||| ||||||| |||||||||||||||||    
T  29168612 gctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttca 29168556  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 46082552 - 46082492
Alignment:
Q  246 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 306  Q
    |||||||||| ||||||| ||||||||||  | || | ||||||| |||||||||||||||    
T  46082552 gtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactt 46082492  T

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