View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_24 (Length: 395)
Name: NF0688_low_24
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 66 - 305
Target Start/End: Complemental strand, 7610176 - 7609937
Alignment:
| Q |
66 |
gagttttgcctacggccggtatcgaccgatacccaaccaaacatcagaaaatctaaaagtttacctaattttaattagttgattggtaagttactcataa |
165 |
Q |
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| T |
7610176 |
gagttttgcctccggccggtatcgaccgatacccaaccaaacatcagaaaatctaaaagtttacctaattttaattagttaattggtaagttactcataa |
7610077 |
T |
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| Q |
166 |
ttcatctaaggtaacctagaaaaaaccaaaatgtaattgctatcaacatacatgtataaatttgggtacacatannnnnnnncaactacgagatagatac |
265 |
Q |
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| T |
7610076 |
ttcatttaaggtaacctagaaaaaaccaaaatgtaattgctatcaacatacatgtataaatttgggtacacatttttttttttaactacgagatagatat |
7609977 |
T |
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| Q |
266 |
gaatattataacaatatgtccatacctattaattgcggga |
305 |
Q |
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| T |
7609976 |
gaatattataacaatatgtccatacccatcaattgcggga |
7609937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 33262402 - 33262342
Alignment:
| Q |
130 |
ctaattttaattagttgattggtaagttactcataattcatctaaggtaacctagaaaaaa |
190 |
Q |
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| T |
33262402 |
ctaattttaattggtttataggtaaattactcgtaattcttcaaagataacctagaaaaaa |
33262342 |
T |
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