View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_26 (Length: 392)
Name: NF0688_low_26
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 51856591 - 51856859
Alignment:
| Q |
20 |
aaacgagattgattaaagtcacacattgcaggaccaatttcac-agaatcatgtcttattattaagttccctgtttaataatcaacaaccaatataagag |
118 |
Q |
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| T |
51856591 |
aaacgagattgattaaagtcacacattgcaggaccaatttcactagaatcatgtcttattattatgttccctgtttaataatcaacaaccaatataagag |
51856690 |
T |
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| Q |
119 |
tggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacagcac----------------aaataaagaaagggaactaga |
202 |
Q |
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| T |
51856691 |
tggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaaagggaactaga |
51856790 |
T |
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| Q |
203 |
tctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagctccttcatgatg |
271 |
Q |
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| T |
51856791 |
tctagaagataacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatg |
51856859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 51856538 - 51856569
Alignment:
| Q |
108 |
caatataagagtggcttgttacccttcaaact |
139 |
Q |
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| T |
51856538 |
caatataagagtggcttgttacccttcaaact |
51856569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 8945724 - 8945903
Alignment:
| Q |
108 |
caatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacagcacaaat----------------aaagaa |
191 |
Q |
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| T |
8945724 |
caatataagagtggcttgttacccttcaaactttaataataaaaatcaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaa |
8945823 |
T |
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| Q |
192 |
agggaactagatctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagctccttcatgatg |
271 |
Q |
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| T |
8945824 |
agggaactagatctagaagataacctgtactacatgataatgaagggtcgttctaaaaatcatttagctccttcacgatg |
8945903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 271
Target Start/End: Original strand, 43262898 - 43263109
Alignment:
| Q |
77 |
ttattaagttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaataataaaaattaaac-tttaatttttcttaaca |
175 |
Q |
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|||||| ||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
43262898 |
ttattatgttgcctgttcaataatcaacaaccaatatgagagtggattgttacccttcaaactttaataataaaaattaaacttttctttttttttaaca |
43262997 |
T |
|
| Q |
176 |
cagcac----------------aaataaagaaagggaactagatctagaagataaactgtactacatgataatgaagggtccttctaaaaatcatttagc |
259 |
Q |
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| T |
43262998 |
cagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactgcatgatgttgaagggtccttctacaaatcctttagc |
43263097 |
T |
|
| Q |
260 |
tccttcatgatg |
271 |
Q |
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|| |||| |||| |
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| T |
43263098 |
tcattcacgatg |
43263109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 45480436 - 45480376
Alignment:
| Q |
20 |
aaacgagattgattaaagtcacacattgcaggaccaatttcac-agaatcatgtcttatta |
79 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| || |||||||| ||||||| |
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| T |
45480436 |
aaacgagattgattaaagtcacacgttgcagtaccaatttgactagaatcataacttatta |
45480376 |
T |
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