View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_28 (Length: 377)
Name: NF0688_low_28
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 2368623 - 2368961
Alignment:
| Q |
30 |
aacatatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatgtactgatttattgaaatacgtatttattcaagtctgagttttcctt |
129 |
Q |
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| T |
2368623 |
aacatatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatttactgatttattgaaatacgtatttattcaagtctgagttttcctt |
2368722 |
T |
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| Q |
130 |
taattttctgtaatgttttgcgtgtaagctaaaacactttgaatcagaagcttgtcaagagtttccctgaagagaacacattcctatattgatagttaat |
229 |
Q |
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| T |
2368723 |
taattttctgtaatgttttgcgtgtaagctaaaacactttgaatcagaagcttgtcaagagtttccctgaagagaacacattcctatattgatagttaat |
2368822 |
T |
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| Q |
230 |
gaattttggtaatgaagcaaatttgattctccttagtctattattattttgaagaatctttagtctactatt-aattcatagtggctcatatccctttga |
328 |
Q |
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| T |
2368823 |
gaattttggtaatgaagcaaatttgattctccttagtctattattattttgaagaatctttagtctactattaaaatcatagtggctcatatccctttga |
2368922 |
T |
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| Q |
329 |
aacaagagggtttctgctttctgagttgcattatattat |
367 |
Q |
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| T |
2368923 |
aacaagagggtttctgctttctgagttgcattatattat |
2368961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 12125916 - 12125855
Alignment:
| Q |
32 |
catatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatgtactgattta |
93 |
Q |
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| T |
12125916 |
catatgcatatttatttatcttgtagtgaatgtttgttcgtgcaaatatatgtattgattta |
12125855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 2374199 - 2374318
Alignment:
| Q |
30 |
aacatatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatgtactgatttattgaaatacgtatttattcaagtctgagttttcctt |
129 |
Q |
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|||||| |||||||||||||||||||| ||||||||| || || |||||| ||| ||||||| ||| || |||||| ||| |||||| ||| ||| |
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| T |
2374199 |
aacataggcatatttatttatcttctattggatgttttctcttgtgaatataagtattgatttactgagttaaatatttacccaactctgagattttctt |
2374298 |
T |
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| Q |
130 |
taattttctgtaatgttttg |
149 |
Q |
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| T |
2374299 |
ttattttctgtaatgatttg |
2374318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 2546161 - 2546094
Alignment:
| Q |
30 |
aacatatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatgtactgatttattga |
97 |
Q |
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| T |
2546161 |
aacataggcatatttaattttcttctaatgatggtttgttcttgcaaatatatgtattgatttattga |
2546094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 12125849 - 12125760
Alignment:
| Q |
122 |
ttttcctttaattttctgtaatgttttgcgtgtaagctaaaacactttgaatcagaagcttgtcaagagtttccctgaagagaacacatt |
211 |
Q |
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|||| |||||||| || |||| | |||| ||||||| ||||||| | ||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
12125849 |
tttttctttaattatcagtaaggatttgtttgtaagccaaaacacatcgaatccgaagcttgtcaagagtttccctatagaaaacacatt |
12125760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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