View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_3 (Length: 551)
Name: NF0688_low_3
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 548
Target Start/End: Complemental strand, 26037691 - 26037170
Alignment:
| Q |
30 |
gagatcatatgtttggtatagttcatggcctgctaagcctcttgtggaagctagtttcagaaggagcattggtatagtatatggctttagaatgacacaa |
129 |
Q |
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| T |
26037691 |
gagatcacatgtttggtatagttcatggcctgctaagcctcttgtggaagctagtttcagaaggagcattggtatagtatatggctttagaatgacacaa |
26037592 |
T |
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| Q |
130 |
ctcttcattgtccaactcatcttttacctttgtggtcagatttctgtgtccaagaccttttgcaccatcaatggcttggaacgaacctgtgatctgatgc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26037591 |
ctcttcattgtccaactcatcttttacctttgtggtcagattt--gtgtcgaagaccttttgcaccatcaaaggcttggaacgaacctgtgatctgatgc |
26037494 |
T |
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| Q |
230 |
atactcccaaattctttgtatgatactattattaacaccctattttcctcaagtaaataagacaatatcattaggtatcctgacgatgcgatttcttatt |
329 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26037493 |
atactcccaaattctttgtataatgctattattaacaccctattttcctcaagtatataagacaatatcattaggtatcctgacgatgcgatttcttatt |
26037394 |
T |
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| Q |
330 |
tggttaagtcaacttataaagcttgccatgactcagttagttgacatcacacatctccatgtcaatttccttccaacttcacaccaacttggaactttat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26037393 |
tggttaagtcaacttataaagcttgccatgactcagttagttgacaccacacatctccatgtcaatttccttccaacttcacaccaacttggaactttat |
26037294 |
T |
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| Q |
430 |
ctggaatttgcaagttcttcctcgagttaaattgttattgtggtgtgcctgtcgcaaatgtctgcatattggtt-----gatttcaaactaagggagttc |
524 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
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| T |
26037293 |
ctggaatttgcaagttcttccttgagttaaattgttattgtggtgtgcctgtcgcaaatgtttgcatattggtttggttggtttcaaactaagggagttt |
26037194 |
T |
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| Q |
525 |
gatgctcttcatattattcgacat |
548 |
Q |
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||||||||||||||| || ||||| |
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| T |
26037193 |
gatgctcttcatattgtttgacat |
26037170 |
T |
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