View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_30 (Length: 374)

Name: NF0688_low_30
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_30
NF0688_low_30
[»] chr8 (8 HSPs)
chr8 (71-320)||(40320573-40320822)
chr8 (71-208)||(5688850-5688987)
chr8 (71-207)||(18141421-18141557)
chr8 (78-196)||(8149951-8150068)
chr8 (71-170)||(9765387-9765485)
chr8 (113-170)||(26402719-26402776)
chr8 (150-208)||(30291217-30291275)
chr8 (113-162)||(6127773-6127822)
[»] chr4 (6 HSPs)
chr4 (71-208)||(36463833-36463970)
chr4 (74-208)||(45687630-45687764)
chr4 (84-208)||(52467778-52467902)
chr4 (71-208)||(46147787-46147908)
chr4 (123-170)||(24334610-24334657)
chr4 (77-170)||(3793592-3793686)
[»] chr3 (10 HSPs)
chr3 (71-208)||(29196863-29197000)
chr3 (71-208)||(9666899-9667036)
chr3 (71-196)||(28074012-28074137)
chr3 (75-208)||(44700927-44701061)
chr3 (71-208)||(31314120-31314252)
chr3 (71-173)||(25796285-25796387)
chr3 (71-169)||(47650075-47650174)
chr3 (133-170)||(24177031-24177068)
chr3 (74-157)||(3715496-3715579)
chr3 (160-208)||(5372823-5372871)
[»] chr7 (7 HSPs)
chr7 (71-207)||(24526349-24526486)
chr7 (91-208)||(12098250-12098367)
chr7 (81-208)||(8152948-8153080)
chr7 (129-208)||(41317954-41318033)
chr7 (79-193)||(22269351-22269464)
chr7 (71-128)||(41317878-41317935)
chr7 (71-169)||(29160267-29160365)
[»] chr2 (7 HSPs)
chr2 (71-208)||(33162860-33162997)
chr2 (74-208)||(36773148-36773283)
chr2 (71-170)||(34681824-34681923)
chr2 (74-147)||(11066953-11067026)
chr2 (71-170)||(42269877-42269977)
chr2 (71-171)||(31056551-31056652)
chr2 (167-208)||(11066908-11066949)
[»] chr1 (11 HSPs)
chr1 (81-208)||(50169630-50169758)
chr1 (71-208)||(28266019-28266156)
chr1 (71-208)||(776848-776983)
chr1 (81-208)||(50167608-50167736)
chr1 (135-208)||(45644824-45644897)
chr1 (134-208)||(8871591-8871665)
chr1 (91-196)||(47256016-47256120)
chr1 (71-173)||(40816325-40816427)
chr1 (71-170)||(47703428-47703527)
chr1 (126-173)||(19073422-19073469)
chr1 (126-173)||(19121312-19121359)
[»] chr6 (3 HSPs)
chr6 (71-208)||(3039366-3039504)
chr6 (71-173)||(21800909-21801011)
chr6 (157-208)||(4045014-4045065)
[»] chr5 (4 HSPs)
chr5 (71-170)||(10282216-10282316)
chr5 (79-196)||(28277708-28277824)
chr5 (73-170)||(3881240-3881338)
chr5 (126-173)||(16642578-16642625)
[»] scaffold0477 (1 HSPs)
scaffold0477 (71-170)||(5446-5547)
[»] scaffold0148 (1 HSPs)
scaffold0148 (123-170)||(11288-11335)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 71 - 320
Target Start/End: Complemental strand, 40320822 - 40320573
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  40320822 tgccacgttcctcctacattgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgccacgattt 40320723  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaactttcgattttagtttgcgacaagacacaccatatgaaatgggaagagaagtcccacggaata 270  Q
    ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40320722 ttccaaacttcaacttcaattttaagacacatttcaattttcgattttagtttgggacaagacacaccatatgaaatgggaagagaagtcccacggaata 40320623  T
Q  271 tgtacgtcgcaagctacaaatttggtttgaaggacccctaccccccattt 320  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  40320622 tgtacgtcgcaaactacaaatttggtttgaaggacccccaccccccattt 40320573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 5688987 - 5688850
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5688987 tgccacgttcctcctggatcgtgccacgattttttcagtgacaaccaaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattt 5688888  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| |||||||||| |||||||||||||||||||||||    
T  5688887 ttccaaacttcaacatcaattttgagacacatttcaac 5688850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 18141557 - 18141421
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || ||||||  |||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||     
T  18141557 tgccacgttcctcctggatcgtgccataatttttccagtggcaacccaaaaactgaaccgttcaatcgtgcgacgttgccctgcaaacgtgccacgattg 18141458  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaa 207  Q
    ||| | |||||||| ||||||||||||||||||||||    
T  18141457 ttccagacttcaacatcaattttgagacacatttcaa 18141421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 8149951 - 8150068
Alignment:
Q  78 ttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaa 177  Q
    ||||||||  || ||||||||| ||||  |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| | |    
T  8149951 ttcctcctagatcgtgccacgaattttctagtggcaacccaaaaactgaaccattcaatcgtgccacattgccctgcaaacgtgccacga-ttttccaga 8150049  T
Q  178 cttcaacttcaattttgag 196  Q
    ||||| | |||||||||||    
T  8150050 cttcaccatcaattttgag 8150068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 9765485 - 9765387
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||| ||||||| | ||| ||| || |||  |||||||| |||||||||| |||||||||||||||||||||||||||    
T  9765485 tgccacgttcctcctggatcgtgccatgatttttcc-gtgacaaacccaaatatgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgattt 9765387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 26402776 - 26402719
Alignment:
Q  113 aacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  26402776 aacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgattt 26402719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 30291275 - 30291217
Alignment:
Q  150 cctgcaaacgtgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||    
T  30291275 cctgcaaacgtgcgacgatttttccagacttcaacatcaattttgagacacatttcaac 30291217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 6127773 - 6127822
Alignment:
Q  113 aacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgc 162  Q
    ||||||||| ||||||||| |||||||||| | |||||||||||||||||    
T  6127773 aacccaaaatctgaaccatccaatcgtgccacattgccctgcaaacgtgc 6127822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 36463833 - 36463970
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||     
T  36463833 tgccacgttcctcctgcatcgtgccacgattttttcaatggcaacccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgattg 36463932  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| |||||||||  |||||||||||||||||||||||    
T  36463933 ttccaaacttcaatatcaattttgagacacatttcaac 36463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 74 - 208
Target Start/End: Original strand, 45687630 - 45687764
Alignment:
Q  74 cacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttc 173  Q
    ||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  45687630 cacgttcctcctggatcgtgccacgacttttccagtggcaacccaaaaactgaaccattcaatcgtaccacgttgccctgcaaacgtgccacgatttttc 45687729  T
Q  174 taaacttcaacttcaattttgagacacatttcaac 208  Q
     |||||||||| |||||||||||||||||||||||    
T  45687730 caaacttcaacatcaattttgagacacatttcaac 45687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 52467778 - 52467902
Alignment:
Q  84 ctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaa 183  Q
    |||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||    
T  52467778 ctgcatcgtgcctcgattttttcaatggcaacccaaaacctgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattgttttagacttcaa 52467877  T
Q  184 cttcaattttgagacacatttcaac 208  Q
    | |||||||||||||||||||||||    
T  52467878 catcaattttgagacacatttcaac 52467902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 46147787 - 46147908
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||||||||||| ||||| ||| || ||| ||||||||||||||||                |||||||||| |||||    
T  46147787 tgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaacctgaaccattcaatcg----------------aaacgtgccatgattt 46147870  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| |||||||||| |||||||||||||||||||||||    
T  46147871 ttccaaacttcaacatcaattttgagacacatttcaac 46147908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 24334610 - 24334657
Alignment:
Q  123 ctgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||    
T  24334610 ctgaaccatccaatcgtgacacgttgccctgcaaacgtgccacgattt 24334657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 3793686 - 3793592
Alignment:
Q  77 gttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||| || |||||||||||||| ||| |  || ||||| | ||||||||| ||||||| ||  ||| ||||||||||||||||||||||    
T  3793686 gttcctcctggatcgtgccacgatttttccagcgaaaaacccaatatctgaaccatccaatcgtaccatgtttccctgcaaacgtgccacgattt 3793592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 29196863 - 29197000
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  29196863 tgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaattgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattt 29196962  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    | | |||||||||| |||||||||||||||||||||||    
T  29196963 tcccaaacttcaacatcaattttgagacacatttcaac 29197000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 9666899 - 9667036
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||     
T  9666899 tgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaacccttcaatcgtgccacgttgccctgcaaacgtgccacgattg 9666998  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| |||||||||| | |||||||||||||||||||||    
T  9666999 ttccaaacttcaacattaattttgagacacatttcaac 9667036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 28074137 - 28074012
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  28074137 tgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccacaattt 28074038  T
Q  171 ttctaaacttcaacttcaattttgag 196  Q
    |||||||||||||| |||||||||||    
T  28074037 ttctaaacttcaacatcaattttgag 28074012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 44700927 - 44701061
Alignment:
Q  75 acgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccac-gatttttc 173  Q
    |||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  44700927 acgttcctcctggatcgtgccacgatttttccagtggtaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccacggttttttc 44701026  T
Q  174 taaacttcaacttcaattttgagacacatttcaac 208  Q
     | |||||||  |||||||||||||||||||||||    
T  44701027 cagacttcaaaatcaattttgagacacatttcaac 44701061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 31314252 - 31314120
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||     |||| ||| || ||||||||||||||||||||||    
T  31314252 tgccacgttcctcttggatcgtgccacgatttttccagtggcgacccaaaaactgaaccat-----cgtgtcgcattaccctgcaaacgtgccacgattt 31314158  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||  |||||||||| |||||||||||||||||||||||    
T  31314157 tttcaaacttcaacatcaattttgagacacatttcaac 31314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 25796285 - 25796387
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||||| || ||| |||||||||| ||||| ||| |||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  25796285 tgccacgttcctcctggatcgtgtcacgatttttccagtgacaaaccaaaacctgaatcatccaatcgtgccacgttgccctgcaaacgtgccacgattt 25796384  T
Q  171 ttc 173  Q
    |||    
T  25796385 ttc 25796387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 47650075 - 47650174
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaa-cgtgccacgatt 169  Q
    |||||||||||||||| || ||||||  |||||| ||  | ||| || ||| ||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  47650075 tgccacgttcctcctggatcgtgccataatttttccaacgacaaacccaaatctgaaccaaccaatcgtgccacgttgccctgcaaatcgtgccacgatt 47650174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 24177068 - 24177031
Alignment:
Q  133 caatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgattt 24177031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 3715579 - 3715496
Alignment:
Q  74 cacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaa 157  Q
    ||||||||||||| || ||||||| |||||| ||| | ||| |  ||| ||||||||  |||||||||| ||||||||||||||    
T  3715579 cacgttcctcctggatcgtgccacaatttttccagcgacaaacacaaatctgaaccaaccaatcgtgccacgttgccctgcaaa 3715496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 5372871 - 5372823
Alignment:
Q  160 tgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    |||||||||||||  | | |||||| |||||||||||||||||||||||    
T  5372871 tgccacgattttttcagatttcaacatcaattttgagacacatttcaac 5372823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 24526349 - 24526486
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatt 169  Q
    |||||||||||||||| || |||||||||||||| ||||| ||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  24526349 tgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 24526448  T
Q  170 tttctaaacttcaacttcaattttgagacacatttcaa 207  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24526449 tttccaaacttcaacttcaattttgagacacatttcaa 24526486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 12098250 - 12098367
Alignment:
Q  91 gtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaacttcaat 190  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||    
T  12098250 gtgccacgatttttccagtggcaatccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttccaaacttcaacatcaat 12098349  T
Q  191 tttgagacacatttcaac 208  Q
    ||||||||||||||||||    
T  12098350 tttgagacacatttcaac 12098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 8153080 - 8152948
Alignment:
Q  81 ctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaactt 180  Q
    ||||||||| ||||||| |||||| ||||| ||||||||||| |||||||||||||| ||||  ||||||||||||||||||||||| ||||| ||||||    
T  8153080 ctcctgcatcgtgccacaatttttccagtgtcaacccaaaaattgaaccattcaatcctgccatgttgccctgcaaacgtgccacgagttttccaaactt 8152981  T
Q  181 ca-----acttcaattttgagacacatttcaac 208  Q
    ||     || |||||||||||||||||||||||    
T  8152980 caacatcacatcaattttgagacacatttcaac 8152948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 41317954 - 41318033
Alignment:
Q  129 cattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41317954 cattcaatcgtgccacgttgccctacaaacgtgccacgatttttccaaacttcaacttcaattttgagacacatttcaac 41318033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 22269464 - 22269351
Alignment:
Q  79 tcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaac 178  Q
    |||||||| || |||||||||||||| ||||| |||||||||   ||||||||  ||||||||| |||||||||||||||||||||||||||||| | ||    
T  22269464 tcctcctggatcgtgccacgatttttccagtgacaacccaaact-tgaaccatcaaatcgtgccacgttgccctgcaaacgtgccacgatttttccagac 22269366  T
Q  179 ttcaacttcaatttt 193  Q
    |||| | ||||||||    
T  22269365 ttcaccatcaatttt 22269351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 41317878 - 41317935
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaac 128  Q
    ||||||||  ||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  41317878 tgccacgtatctcctgcatcgtgccacgatttttcgagtggcaacccaaaaactgaac 41317935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 29160267 - 29160365
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaa-cgtgccacgatt 169  Q
    |||||||||||||||| || |||||  ||||||| ||||| |||  | ||| ||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  29160267 tgccacgttcctcctggatcgtgccttgattttt-cagtgacaaagccaaacctgaaccaaccaatcgtgccacgttgccctgcaaatcgtgccacgatt 29160365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 33162860 - 33162997
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||    
T  33162860 tgccatgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgtttccctacaaacatgccacgattt 33162959  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| |||||||| | |||||||||||||||||||||||    
T  33162960 ttccaaacttcatcatcaattttgagacacatttcaac 33162997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 36773283 - 36773148
Alignment:
Q  74 cacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttc 173  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||     
T  36773283 cacgttcctcctggatcgtgccacaatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgccacgatttttt 36773184  T
Q  174 taaacttc-aacttcaattttgagacacatttcaac 208  Q
     ||||||| ||| |||||||||||||||||||||||    
T  36773183 caaacttcaaacatcaattttgagacacatttcaac 36773148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 34681923 - 34681824
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||| ||| || |||||||||||||| ||||| ||| || ||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  34681923 tgccacgttcctactggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgattt 34681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 11067026 - 11066953
Alignment:
Q  74 cacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgtt 147  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  11067026 cacgttcctcctagatcgtgccacgattttttcagtggcaacccaaaaactgaacccttcaatcgtgccacgtt 11066953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 42269877 - 42269977
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacc-caaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatt 169  Q
    |||||||||||||||| ||  ||||||||||||| ||| | ||| | ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  42269877 tgccacgttcctcctggatcctgccacgatttttccagcgacaaacgcaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 42269976  T
Q  170 t 170  Q
    |    
T  42269977 t 42269977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 31056551 - 31056652
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatt 169  Q
    ||||| |||||| ||| || |||||| ||||||| ||||| ||| ||||||| ||||||||| |||| ||||| |||||||||||||| |||||||||||    
T  31056551 tgccatgttccttctggatcgtgccatgatttttccagtgacaaacccaaaatctgaaccatccaattgtgccacgttgccctgcaaatgtgccacgatt 31056650  T
Q  170 tt 171  Q
    ||    
T  31056651 tt 31056652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 11066949 - 11066908
Alignment:
Q  167 atttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||||||| |||||||||| |||||||||||||| ||||||||    
T  11066949 atttttccaaacttcaacatcaattttgagacaaatttcaac 11066908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 50169630 - 50169758
Alignment:
Q  81 ctcctgcattgtgccacgattttttcagtggcaacccaaaa-actgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaact 179  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  50169630 ctcctgcatcgtgccacgatttttacagtggcaacccaaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttctaaact 50169729  T
Q  180 tcaacttcaattttgagacacatttcaac 208  Q
    ||||| |||||||| ||| ||||||||||    
T  50169730 tcaacatcaattttaagagacatttcaac 50169758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 28266019 - 28266156
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||| ||||||| || || |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  28266019 tgccatgttcctcttggatcgtgccacgatttttccagtggcaacccaaaatctgaaccattcaatcgtgccacgttgccctgcaaacgtgccatgattt 28266118  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||  ||||||| || |||||||||||||||||||||||    
T  28266119 tttcaaacttccacatcaattttgagacacatttcaac 28266156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 776983 - 776848
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||||||||||||||  | ||||||||||||||||| |||||| | |||||||||||||||||||||||||  ||| |||| |||||||||||||||||    
T  776983 tgccacgttcctcctgggtcgtgccacgattttttcaatggcaatc-aaaaactgaaccattcaatcgtgcca-gtttccctacaaacgtgccacgattt 776886  T
Q  171 ttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  776885 ttccaaacttcaacttcaattttgagacacatttcaac 776848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 50167608 - 50167736
Alignment:
Q  81 ctcctgcattgtgccacgattttttcagtggcaacccaaaaa-ctgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaact 179  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||  || | |||||||||||||||||||||||||||||| |||||    
T  50167608 ctcctgcatcgtgccacgatttttccagtggcaacccaaaaaactgaatcattcaattatgtcacgttgccctgcaaacgtgccacgatttttccaaact 50167707  T
Q  180 tcaacttcaattttgagacacatttcaac 208  Q
    ||||| | |||||||||||||||||||||    
T  50167708 tcaacattaattttgagacacatttcaac 50167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 45644824 - 45644897
Alignment:
Q  135 atcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    |||||||| |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  45644824 atcgtgccacgttgccctgcaaacgtgccacgatttttccaggcttcaacttcaattttgagacacatttcaac 45644897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 8871591 - 8871665
Alignment:
Q  134 aatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    ||||||| | |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  8871591 aatcgtgtcacgttgccctgcaaacgtgccacgatttttccagacttcaacatcaattttgagacacatttcaac 8871665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 47256016 - 47256120
Alignment:
Q  91 gtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaacttcaacttcaat 190  Q
    |||||||||||||| ||||| |||| ||||  ||||||||| |||||||||| |||||| ||||||||||||||||||||||| | |||||| | |||||    
T  47256016 gtgccacgatttttccagtgacaactcaaac-ctgaaccatccaatcgtgccacgttgcactgcaaacgtgccacgatttttccagacttcaccatcaat 47256114  T
Q  191 tttgag 196  Q
    ||||||    
T  47256115 tttgag 47256120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 40816427 - 40816325
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttg-ccctgcaaacgtgccacgatt 169  Q
    |||||||||||||||| || |||||||||||||| || || ||| || ||| ||||||||| ||||||| ||  |||| |||||||||| ||||||||||    
T  40816427 tgccacgttcctcctggatcgtgccacgatttttccaatgacaaacc-aaacctgaaccatccaatcgtaccatgttgcccctgcaaacatgccacgatt 40816329  T
Q  170 tttc 173  Q
    ||||    
T  40816328 tttc 40816325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 47703527 - 47703428
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||| ||| || |||| |||| |||| ||| | ||| || |||  |||||||| |||||||||| |||||||||||||| |||| |||||||    
T  47703527 tgccacgttccttctggatcgtgctacgaattttccagcgacaaacccaaatttgaaccatccaatcgtgccacgttgccctgcaaatgtgctacgattt 47703428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 19073422 - 19073469
Alignment:
Q  126 aaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttc 173  Q
    |||||| |||||||||| ||||||| |||||||||||||| |||||||    
T  19073422 aaccatccaatcgtgccacgttgccttgcaaacgtgccaccatttttc 19073469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 19121312 - 19121359
Alignment:
Q  126 aaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttc 173  Q
    |||||| |||||||||| ||||||| |||||||||||||| |||||||    
T  19121312 aaccatccaatcgtgccacgttgccttgcaaacgtgccaccatttttc 19121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 3039366 - 3039504
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatt 169  Q
    |||||||||||||||| ||| ||||||||||||| ||| | ||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  3039366 tgccacgttcctcctggattttgccacgatttttccagcgacaaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 3039465  T
Q  170 tttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    || | |||||||||| | |||||||||||||||||||||    
T  3039466 ttcccaaacttcaacataaattttgagacacatttcaac 3039504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 21801011 - 21800909
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    ||||| ||||||| || || |||||||||||||| ||||| ||| || ||| ||||||||| ||||||| || |||||||||||||||||||||||||||    
T  21801011 tgccatgttcctcttggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtaccacgttgccctgcaaacgtgccacgattt 21800912  T
Q  171 ttc 173  Q
    |||    
T  21800911 ttc 21800909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 4045065 - 4045014
Alignment:
Q  157 acgtgccacgatttttctaaacttcaacttcaattttgagacacatttcaac 208  Q
    |||||||||||||| |  | |||||||| |||||||||||||||||||||||    
T  4045065 acgtgccacgatttcttcagacttcaacatcaattttgagacacatttcaac 4045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 10282216 - 10282316
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatt 169  Q
    |||||||||||||||| || |||||||||||||| ||| | ||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  10282216 tgccacgttcctcctggatcgtgccacgatttttccagcgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatt 10282315  T
Q  170 t 170  Q
    |    
T  10282316 t 10282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 28277824 - 28277708
Alignment:
Q  79 tcctcctgcattgtgccacgattttttcagtggcaacccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttctaaac 178  Q
    |||||||| || ||||||| |||||| || || |||||||||  || |||||| |||||||||| |||||||||||||||||||||||||||||||| ||    
T  28277824 tcctcctggatcgtgccacaatttttccaatgacaacccaaac-ctaaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatttttctagac 28277726  T
Q  179 ttcaacttcaattttgag 196  Q
    |||| | |||||||||||    
T  28277725 ttcaccatcaattttgag 28277708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 3881240 - 3881338
Alignment:
Q  73 ccacgttcctcctgcattgtgccacgattttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||||||| || |||||||||||||| ||  |  || ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  3881240 ccacgttcctcctggatcgtgccacgatttttccaacgataaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccacgattt 3881338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 16642578 - 16642625
Alignment:
Q  126 aaccattcaatcgtgccgcgttgccctgcaaacgtgccacgatttttc 173  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||    
T  16642578 aaccatccaatcgtgccacgttgctctgcaaacgtgccacgatttttc 16642625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 5547 - 5446
Alignment:
Q  71 tgccacgttcctcctgcattgtgccacg-attttttcagtggcaa-cccaaaaactgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgat 168  Q
    |||||||||| | |||||| |||||||| |||||| ||| | ||| ||||||| |||||||||  ||||||||| |||||||||||||||||| || |||    
T  5547 tgccacgttctttctgcatcgtgccacgtatttttccagcgacaaacccaaaatctgaaccatctaatcgtgccacgttgccctgcaaacgtgtcatgat 5448  T
Q  169 tt 170  Q
    ||    
T  5447 tt 5446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 11288 - 11335
Alignment:
Q  123 ctgaaccattcaatcgtgccgcgttgccctgcaaacgtgccacgattt 170  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||||    
T  11288 ctgaaccatctaatcgtgccacgttgccctgcaaacgtgccacgattt 11335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University