View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_33 (Length: 368)

Name: NF0688_low_33
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_33
NF0688_low_33
[»] chr3 (10 HSPs)
chr3 (122-339)||(10709663-10709880)
chr3 (38-127)||(10709899-10709988)
chr3 (141-254)||(25384750-25384865)
chr3 (135-255)||(11916696-11916819)
chr3 (199-334)||(268163-268300)
chr3 (141-284)||(19190935-19191079)
chr3 (193-335)||(19194785-19194928)
chr3 (146-203)||(30103442-30103500)
chr3 (242-311)||(8605527-8605595)
chr3 (193-284)||(19194955-19195046)
[»] chr6 (5 HSPs)
chr6 (141-336)||(12331196-12331395)
chr6 (199-310)||(22460113-22460224)
chr6 (135-336)||(21737535-21737743)
chr6 (122-179)||(22460052-22460109)
chr6 (66-98)||(21737804-21737836)
[»] scaffold2087 (1 HSPs)
scaffold2087 (122-336)||(294-512)
[»] scaffold0113 (1 HSPs)
scaffold0113 (141-336)||(21814-22005)
[»] chr8 (6 HSPs)
chr8 (146-310)||(16218336-16218493)
chr8 (146-257)||(20534583-20534695)
chr8 (141-336)||(24818796-24818995)
chr8 (166-336)||(15064408-15064580)
chr8 (66-119)||(24272564-24272617)
chr8 (207-257)||(22707062-22707112)
[»] chr5 (7 HSPs)
chr5 (179-336)||(26251987-26252146)
chr5 (146-339)||(25558699-25558897)
chr5 (134-336)||(23340867-23341073)
chr5 (179-284)||(26060430-26060536)
chr5 (66-119)||(23341112-23341165)
chr5 (270-310)||(21215912-21215952)
chr5 (200-240)||(26645074-26645114)
[»] chr7 (5 HSPs)
chr7 (158-339)||(16367367-16367553)
chr7 (146-247)||(13070730-13070832)
chr7 (166-280)||(17913651-17913765)
chr7 (187-256)||(14072852-14072921)
chr7 (187-256)||(14382880-14382949)
[»] chr4 (6 HSPs)
chr4 (124-253)||(17380225-17380355)
chr4 (120-257)||(19180072-19180210)
chr4 (179-308)||(16670268-16670398)
chr4 (133-334)||(12789054-12789258)
chr4 (66-119)||(17380143-17380196)
chr4 (133-228)||(20394322-20394417)
[»] chr2 (5 HSPs)
chr2 (40-104)||(39665514-39665578)
chr2 (168-247)||(39665345-39665424)
chr2 (269-336)||(23282386-23282454)
chr2 (269-310)||(24690059-24690100)
chr2 (269-310)||(24699410-24699451)
[»] scaffold0171 (1 HSPs)
scaffold0171 (122-284)||(5136-5300)
[»] scaffold0126 (1 HSPs)
scaffold0126 (193-311)||(32416-32534)
[»] scaffold0599 (1 HSPs)
scaffold0599 (135-255)||(8447-8570)
[»] scaffold0086 (1 HSPs)
scaffold0086 (203-336)||(9186-9320)
[»] scaffold0064 (2 HSPs)
scaffold0064 (141-334)||(5766-5961)
scaffold0064 (67-125)||(6001-6059)
[»] scaffold0496 (1 HSPs)
scaffold0496 (179-336)||(11061-11221)
[»] scaffold0134 (1 HSPs)
scaffold0134 (135-226)||(14036-14128)
[»] scaffold0613 (1 HSPs)
scaffold0613 (190-336)||(1784-1932)
[»] chr1 (1 HSPs)
chr1 (270-312)||(25094594-25094636)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 10709880 - 10709663
Alignment:
Q  122 aactcttacttcttaattataaatagttactacacgcttaactcttaaaacatctcataattaccatctcaaaatatttaccactagttacttctaactt 221  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10709880 aactcttacttcttaattataaatagttactacacactttactcttaaaacatctcataattaccgtctcaaaatatttaccactagttacttctaactt 10709781  T
Q  222 agtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaatacttagtcctgaa 321  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  10709780 ggtaaaaacaaccattcacgctaaaacactaaaataatccttattctaaaatgaataaattactcttactcaacaaatgaccgaaatacttagtcctgaa 10709681  T
Q  322 aatgactaaaataccttt 339  Q
    |||||| |||||||||||    
T  10709680 aatgaccaaaataccttt 10709663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 10709988 - 10709899
Alignment:
Q  38 aattgtgaaatgtgtgaatgaatgagtgtaaccctaatttcctctcatgagttaactatatatactctaataatgggttagggtaactct 127  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10709988 aattgtgaaatgcgtgaatgaatgagtgtaaccctaatttcctctcatgagttatctatatatactctaataatgggttagggtaactct 10709899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 25384865 - 25384750
Alignment:
Q  141 taaatagttactacacgcttaactc-ttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattc 238  Q
    |||| ||||| ||| | |||||||| |||||||||||||| ||||| ||| |||||||| ||||||| ||||||| ||||||| ||||||| ||| ||||    
T  25384865 taaaaagttattactcacttaactcgttaaaacatctcattaattatcatttcaaaataattaccacaagttactactaacttggtaaaaataactattc 25384766  T
Q  239 acgctaaaacactaaa 254  Q
    || |||||||||||||    
T  25384765 acactaaaacactaaa 25384750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 11916819 - 11916696
Alignment:
Q  135 taattataaatagttactacacgcttaactcttaaaacatctcataatt--accatctcaaaata-tttaccactagttacttctaacttagtaaaaaca 231  Q
    ||||| |||| || |||||||| |||||||| | ||||||||||| |||  |||||||||||||| |||| ||||||||||| ||| ||||||||||| |    
T  11916819 taattctaaaaagctactacacacttaactcattaaacatctcattattttaccatctcaaaataatttatcactagttactactagcttagtaaaaata 11916720  T
Q  232 accattcacgctaaaacactaaaa 255  Q
    |  |||| | ||||||||||||||    
T  11916719 attattctcactaaaacactaaaa 11916696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 334
Target Start/End: Complemental strand, 268300 - 268163
Alignment:
Q  199 ttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaa 298  Q
    ||||||| | ||||||| ||||||| ||||| ||| |||||| | ||||||||||||||||  |  || ||| ||||| ||||||| || ||||||||||    
T  268300 ttaccaccaattacttccaacttagcaaaaataactattcacacaaaaacactaaaataatcatccttataagattacaaaattaccctcactcaacaaa 268201  T
Q  299 tgaccaaaata--cttagtcctgaaaatgactaaaata 334  Q
    |||| ||| ||  |||| |||| ||| |||||||||||    
T  268200 tgacaaaattacccttaatcctaaaattgactaaaata 268163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 284
Target Start/End: Complemental strand, 19191079 - 19190935
Alignment:
Q  141 taaatagttactacacgcttaactc-ttaaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattca 239  Q
    |||| ||||||||||| |||||||| ||||||||||   ||||||| |  |||||||| ||||  | ||||||  |||||||| |||||| ||| ||||     
T  19191079 taaaaagttactacacacttaactcattaaaacatccattaattacgacatcaaaataattactgcaagttaccactaacttaataaaaataactattcg 19190980  T
Q  240 cgctaaaacactaaaataattcttattctaaaattactaaattac 284  Q
    | |||||| | |||||||||   |||| |||||||||||| ||||    
T  19190979 cactaaaatattaaaataatctatattttaaaattactaatttac 19190935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 19194928 - 19194785
Alignment:
Q  193 aaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacacta-aaataattcttattctaaaattactaaattactcttact 291  Q
    ||||| |||||||||||||| |||||||||||||||  ||| ||||||   ||||||||| ||||||| |  || |||||||||| || ||||  | ||     
T  19194928 aaataattaccactagttacctctaacttagtaaaat-aactattcacctaaaaacactagaaataatccacatcctaaaattacgaagttaccatcaca 19194830  T
Q  292 caacaaatgaccaaaatac--ttagtcctgaaaatgactaaaatac 335  Q
    |  ||||||||||||||||  |||||| | ||||||||||||||||    
T  19194829 cgtcaaatgaccaaaatacccttagtcat-aaaatgactaaaatac 19194785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 30103500 - 30103442
Alignment:
Q  146 agttactacacgcttaactc-ttaaaacatctcataattaccatctcaaaatatttacc 203  Q
    ||||||||| | |||| ||| ||||||||||| || |||||||||||||||||||||||    
T  30103500 agttactactcacttatctcattaaaacatctaattattaccatctcaaaatatttacc 30103442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 8605527 - 8605595
Alignment:
Q  242 ctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaatact 311  Q
    |||||||||||||||||| ||  | | ||||||||||| |||| ||||||||  ||||||||||||||||    
T  8605527 ctaaaacactaaaataatcctc-tccaaaaattactaatttacccttactcacaaaatgaccaaaatact 8605595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 19195046 - 19194955
Alignment:
Q  193 aaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacacta-aaataattcttattctaaaattactaaattac 284  Q
    ||||| |||||||||||||| ||||||||||| |||| ||| ||||||   ||||||||| ||||||| |  || ||||||||||||| ||||    
T  19195046 aaataattaccactagttacctctaacttagt-aaaataactattcacctaaaaacactagaaataatccagatcctaaaattactaagttac 19194955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 12331395 - 12331196
Alignment:
Q  141 taaatagttactacacgcttaactcttaaaacatctcataa-ttaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattca 239  Q
    |||| ||||||||| |||| ||||||||||||||||||| | ||| |||||||||||| ||||| | ||||||| ||||||||||||||| |||  ||||    
T  12331395 taaaaagttactactcgctaaactcttaaaacatctcattagttatcatctcaaaataattacctcaagttactactaacttagtaaaaataactcttca 12331296  T
Q  240 cgctaaaa-cactaaaataattctt-attctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatac 335  Q
    | | |||| |||||||||| ||||  | |||||||||||||| ||||||||||||| |||||||| ||||||  |||| |||| ||||||||||||||||    
T  12331295 cacaaaaaacactaaaata-ttctacaatctaaaattactaatttactcttactcatcaaatgactaaaatacccttaatcctaaaaatgactaaaatac 12331197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 22460113 - 22460224
Alignment:
Q  199 ttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaa 298  Q
    ||||||| ||| ||| |||||||||| |||| ||| |||||| |||||||| ||||||||| || |||||||||||| |||||||| |||||||||||||    
T  22460113 ttaccacaagtcactactaacttagttaaaataactattcacactaaaacattaaaataatcctcattctaaaattattaaattacccttactcaacaaa 22460212  T
Q  299 tgaccaaaatac 310  Q
    | ||||||||||    
T  22460213 taaccaaaatac 22460224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 336
Target Start/End: Complemental strand, 21737743 - 21737535
Alignment:
Q  135 taattataaatagttactacacgcttaactcttaaaacatctca-taattaccatctcaaaatatttaccactagt---tacttctaacttagtaaaaac 230  Q
    ||||| |||| ||||||||| | |||||||||||| |||||||| |||||| | |||||||||| ||||| | | |   |||| ||||||||||||||      
T  21737743 taattttaaaaagttactactcacttaactcttaagacatctcattaattatcctctcaaaataattacctcaatttactactactaacttagtaaaact 21737644  T
Q  231 aaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaata---cttagtcctgaaaatgac 327  Q
    ||| |||||| ||| ||  |||||| | |   ||||||||| ||||||| |||  ||  |||  |||||||||||||||   ||||||||| || |||||    
T  21737643 aactattcacactagaagtctaaaacattatgtattctaaagttactaatttatcctcgctcctcaaatgaccaaaatactccttagtcctaaagatgac 21737544  T
Q  328 taaaatacc 336  Q
    |||||||||    
T  21737543 taaaatacc 21737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 22460052 - 22460109
Alignment:
Q  122 aactcttacttcttaattataaatagttactacacgcttaactcttaaaacatctcat 179  Q
    |||||||||  ||||||| |||| ||||||||| | ||||| ||||||||||||||||    
T  22460052 aactcttaccacttaattctaaaaagttactactcacttaattcttaaaacatctcat 22460109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 21737836 - 21737804
Alignment:
Q  66 taaccctaatttcctctcatgagttaactatat 98  Q
    |||||||||||||||||||||||||| ||||||    
T  21737836 taaccctaatttcctctcatgagttatctatat 21737804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2087 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold2087
Description:

Target: scaffold2087; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 336
Target Start/End: Complemental strand, 512 - 294
Alignment:
Q  122 aactcttacttcttaattataaatagttactacacgcttaactcttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaact 220  Q
    |||||||||  ||||||| |||| | ||||||||| |||||||| | ||||||||| | |||||||||||||||||| |||||||||| |||  ||||||    
T  512 aactcttaccacttaattctaaaaatttactacacacttaactcattaaacatctctttaattaccatctcaaaataattaccactagctacgactaact 413  T
Q  221 tagtaaaaacaaccattcacgctaaaacact-aaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaat--acttagtcc 317  Q
    ||||||||| ||| |||| | |||||||||| ||||||||  |  |  |||||||||||| |||| | |||||  ||||||||||||||  ||||||||     
T  412 tagtaaaaataactattctcactaaaacactaaaaataatcttcctgttaaaattactaatttacccgtactcgtcaaatgaccaaaatacacttagtct 313  T
Q  318 tgaaaatgactaaaatacc 336  Q
    | |||||||| ||||||||    
T  312 taaaaatgaccaaaatacc 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 22005 - 21814
Alignment:
Q  141 taaatagttactacacgcttaactcttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattca 239  Q
    |||| ||||||||| |  ||||||||||||||||||||| ||||| |||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||    
T  22005 taaaaagttactactcatttaactcttaaaacatctcattaattatcatctcaaaataattacctcaagttacttctaacttagtaaaaataactattca 21906  T
Q  240 cgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatacc 336  Q
    |  |||||||||||||       ||||||||||||||||  |||| || | |   |||||||||||||||  | |||||||||||||||| ||||||||    
T  21905 caataaaacactaaaa-------tattctaaaattactattttaccctcaatactcaaatgaccaaaatacccatagtcctgaaaatgaccaaaatacc 21814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 310
Target Start/End: Original strand, 16218336 - 16218493
Alignment:
Q  146 agttactacacgcttaactcttaaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaa 245  Q
    ||||||||| | ||||| ||||||||||    ||| ||||||||||||| || ||||| | ||| ||  ||||||||||||||| ||| |||||| ||||    
T  16218336 agttactactcacttaattcttaaaaca----atatttaccatctcaaagtagttacctcaagtcaccactaacttagtaaaaataactattcacactaa 16218431  T
Q  246 aacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaatac 310  Q
    ||||||||| |    ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16218432 aacactaaattc---ctttttctaaaattactaatttactcttactcaacaaatgaccaaaatac 16218493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 20534583 - 20534695
Alignment:
Q  146 agttactacacgcttaactcttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgcta 244  Q
    ||||||||| | ||||||||||||| ||| |||| |||||||| ||||||||||||| | | ||||||| ||||||||||||||| ||| |||||||| |    
T  20534583 agttactacccacttaactcttaaatcatttcattaattaccagctcaaaatatttatctcaagttactactaacttagtaaaaataactattcacgcca 20534682  T
Q  245 aaacactaaaata 257  Q
    | |||||||||||    
T  20534683 acacactaaaata 20534695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 24818995 - 24818796
Alignment:
Q  141 taaatagttactacacgcttaactc-ttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaac-ttagtaaaaacaaccatt 237  Q
    |||| ||||||||| | |||||||| |||||||||||||| |||||| ||||||||| | ||||| | ||||||| ||||  |||||||||| ||  |||    
T  24818995 taaaaagttactacccacttaactcattaaaacatctcattaattactatctcaaaacaattacctcaagttactactaatattagtaaaaataattatt 24818896  T
Q  238 cacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatac 335  Q
    ||| |||||||||||||||| |  | |||||||||||||||  |||| ||  ||   ||||| |||||||||  |||||| || ||||||||||||||||    
T  24818895 cacactaaaacactaaaatactcttcattctaaaattactagtttaccctcgcttctcaaattaccaaaatactcttagttct-aaaatgactaaaatac 24818797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 336
Target Start/End: Original strand, 15064408 - 15064580
Alignment:
Q  166 ttaaaacatctca-taattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgct-aaaacactaaaataattctt 263  Q
    ||||| ||||||| |||||| |||||||||||| ||||| | | ||||| | ||||||||||||| ||| |||||| || |||||||||||||| |  |     
T  15064408 ttaaatcatctcaataattaacatctcaaaataattacctcaatttactac-aacttagtaaaaataactattcacactaaaaacactaaaatactcttc 15064506  T
Q  264 attctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatacc 336  Q
     ||||||||||||||  |||| ||  |||  |||||||||||||||  |||||| || |||||||||||||||||    
T  15064507 cttctaaaattactagtttaccctcgctcctcaaatgaccaaaatacccttagttct-aaaatgactaaaatacc 15064580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 24272564 - 24272617
Alignment:
Q  66 taaccctaatttcctctcatgagttaactatatatactctaataatgggttagg 119  Q
    |||| |||||||| |||||||||||| |||||||||||| ||||||||| ||||    
T  24272564 taacactaatttcttctcatgagttagctatatatactcaaataatgggctagg 24272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 22707112 - 22707062
Alignment:
Q  207 agttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaata 257  Q
    |||||||| ||||||| |||||| ||| |||||| ||||||||||||||||    
T  22707112 agttacttttaacttaataaaaataactattcacactaaaacactaaaata 22707062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 26251987 - 26252146
Alignment:
Q  179 taattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattct-tattctaaaattact 277  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||||||| ||| | || | ||||||||||||||| |||||  ||||||||||||||    
T  26251987 taattaccagctcaaaataattaccacaagttactactaacttagtaaaaataacaaatcgcactaaaacactaaaat-attctgcattctaaaattact 26252085  T
Q  278 aaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatacc 336  Q
    |   ||| ||  |||  |||||||||||||||  ||||  |||||||||||||||||||||    
T  26252086 attctaccctcgctcctcaaatgaccaaaatacccttaaccctgaaaatgactaaaatacc 26252146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 339
Target Start/End: Complemental strand, 25558897 - 25558699
Alignment:
Q  146 agttactacacgcttaactct-taaaacatctcat-aattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgct 243  Q
    ||||||||||| ||||||||  ||||||| ||||| || ||| ||||||||||| |||||   ||||||| ||||||||||||||| ||  |||| | ||    
T  25558897 agttactacacacttaactcactaaaacaactcattaaatacaatctcaaaataattacctaaagttactactaacttagtaaaaataaatattctcact 25558798  T
Q  244 aaaa-cactaaaataattctta-ttctaaaattactaaattactcttactcaacaaatgaccaaaatac--ttagtcctgaaaatgactaaaataccttt 339  Q
    |||| ||||||| | ||| ||  ||||||||||||||| |||| |||||||    ||||||||||||||  |||||||| ||||||||||||||||||||    
T  25558797 aaaaacactaaa-tcattattccttctaaaattactaatttacccttactcctggaatgaccaaaatacccttagtcctaaaaatgactaaaataccttt 25558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 23341073 - 23340867
Alignment:
Q  134 ttaattataaatagttactacacgcttaactct-taaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaa 232  Q
    |||||| |||| ||||| ||||| ||||||||  |||||||||   |||||||||  |||||||| ||||| ||||||||| ||||||| ||||||| ||    
T  23341073 ttaattctaaaaagttattacacacttaactcactaaaacatcaattaattaccacttcaaaataattaccgctagttactactaacttggtaaaaataa 23340974  T
Q  233 ccattcacgctaaaacactaaaataattctt-attctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgacta 329  Q
    |||  |||  |||||||| ||||  |||||  |||||||||||||||||||||  | |||| |||||| | |||||||  || | |||| |||||||| |    
T  23340973 ccaaacacattaaaacacaaaaaatattctacattctaaaattactaaattaccgtcactccacaaattatcaaaataccctcaatcctaaaaatgacca 23340874  T
Q  330 aaatacc 336  Q
    |||||||    
T  23340873 aaatacc 23340867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 26060430 - 26060536
Alignment:
Q  179 taattaccatctcaaaatatttaccactagttacttctaa-cttagtaaaaacaaccattcacgctaaaacact-aaaataattcttattctaaaattac 276  Q
    ||||||||||||||||||| ||||| | ||||||| |||| ||||| ||||| ||| |||||  |||||| ||| |||||| |  |||||||||||||||    
T  26060430 taattaccatctcaaaataattacctcaagttactactaatcttag-aaaaataactattcaaactaaaatactaaaaatactctttattctaaaattac 26060528  T
Q  277 taaattac 284  Q
    ||| ||||    
T  26060529 taatttac 26060536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 23341165 - 23341112
Alignment:
Q  66 taaccctaatttcctctcatgagttaactatatatactctaataatgggttagg 119  Q
    |||||||| |||||| |||||||||| ||||||||||   ||||||||||||||    
T  23341165 taaccctagtttcctatcatgagttatctatatatacctcaataatgggttagg 23341112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 21215952 - 21215912
Alignment:
Q  270 aaattactaaattactcttactcaacaaatgaccaaaatac 310  Q
    ||||||||||||||| ||||||||  |||||||||||||||    
T  21215952 aaattactaaattacccttactcacaaaatgaccaaaatac 21215912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 26645114 - 26645074
Alignment:
Q  200 taccactagttacttctaacttagtaaaaacaaccattcac 240  Q
    ||||||||||||| |||||||||||||||| ||| ||||||    
T  26645114 taccactagttacctctaacttagtaaaaataactattcac 26645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 339
Target Start/End: Original strand, 16367367 - 16367553
Alignment:
Q  158 cttaactcttaaaacatctcata---attaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaa 254  Q
    ||||||||||||||||||||  |   |||||||| |||||||| ||||| |  ||||| ||||||||| ||| || ||| ||| ||  ||||  ||||||    
T  16367367 cttaactcttaaaacatctctcattgattaccatatcaaaataattaccccaggttacatctaacttaataataataactattaacattaaagtactaaa 16367466  T
Q  255 ataattctt-attctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaataccttt 339  Q
    ||| ||||  |||||||||||||||| |||| || ||||| |||||||||||||||  ||||||| | ||||||||||||||||||||    
T  16367467 ata-ttctacattctaaaattactaatttaccctcactcatcaaatgaccaaaatactcttagtcttaaaaatgactaaaataccttt 16367553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 13070730 - 13070832
Alignment:
Q  146 agttactacacgcttaactct-taaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgcta 244  Q
    ||||||||||| || |||||| ||||||||||| |||||||||||| |||||| ||||||| ||||| | ||||||||||||||| ||| |||| | |||    
T  13070730 agttactacacactcaactctctaaaacatctcctaattaccatcttaaaataattaccacaagttaatactaacttagtaaaaataactattcccacta 13070829  T
Q  245 aaa 247  Q
    |||    
T  13070830 aaa 13070832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 17913651 - 17913765
Alignment:
Q  166 ttaaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattct-ta 264  Q
    ||||||||||  ||||||||  |||| ||||| ||| ||| ||||||| ||||||||||||||| ||| |||||| |||||| |||||||| |||||  |    
T  17913651 ttaaaacatcgaataattactctctcgaaataattagcacaagttactactaacttagtaaaaataactattcactctaaaatactaaaat-attctaca 17913749  T
Q  265 ttctaaaattactaaa 280  Q
    ||||||||||||||||    
T  17913750 ttctaaaattactaaa 17913765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 14072852 - 14072921
Alignment:
Q  187 atctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaat 256  Q
    |||| |||||| ||||| | ||||||| ||||||||||||||| ||  |||||| ||||||| |||||||    
T  14072852 atcttaaaataattacctcaagttactactaacttagtaaaaataattattcacactaaaacgctaaaat 14072921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 14382880 - 14382949
Alignment:
Q  187 atctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaat 256  Q
    |||| |||||| ||||| | ||||||| ||||||||||||||| ||  |||||| ||||||| |||||||    
T  14382880 atcttaaaataattacctcaagttactactaacttagtaaaaataattattcacactaaaacgctaaaat 14382949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 17380225 - 17380355
Alignment:
Q  124 ctcttacttcttaattataaatagttactacacgcttaactct-taaaacatctcataattaccatctcaaaatatttaccactagttacttctaactta 222  Q
    |||||||  ||||||| |||| ||||||||| | ||| ||||| |||||||||||||||||||  |||||||||| ||| | | ||||||||||||||||    
T  17380225 ctcttaccacttaattctaaaaagttactactcactttactctctaaaacatctcataattacagtctcaaaataattatcccaagttacttctaactta 17380324  T
Q  223 gtaaaaacaaccattcacgctaaaacactaa 253  Q
     |||||| ||||| | || ||||||||||||    
T  17380325 ataaaaataaccaattacactaaaacactaa 17380355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 19180210 - 19180072
Alignment:
Q  120 gtaactcttacttcttaattataaatagttactacacgcttaactc-ttaaaacatctcat-aattaccatctcaaaatatttaccactagttacttcta 217  Q
    |||||||||||| |||||||| |||  |||||||| | |||||||| |||||||||||||| ||||||||||||| |||| ||||| | ||||||| |||    
T  19180210 gtaactcttactacttaattaaaaa--gttactactcacttaactcattaaaacatctcattaattaccatctcagaataattacctcaagttactacta 19180113  T
Q  218 a-cttagtaaaaacaaccattcacgctaaaacactaaaata 257  Q
    | ||||||||| | |||  |||||  |||||||||||||||    
T  19180112 atcttagtaaacataactgttcacattaaaacactaaaata 19180072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 16670398 - 16670268
Alignment:
Q  179 taattaccatctcaaaatatttaccactagttacttctaa-cttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattact 277  Q
    ||||||||||||||||||| ||||| | | || || |||| ||||||||||| ||| |||||| |||||||||||||||| |  | ||||||||||||||    
T  16670398 taattaccatctcaaaataattacctcaaatttctactaatcttagtaaaaataactattcaccctaaaacactaaaatactcttcattctaaaattact 16670299  T
Q  278 aaattactcttactcaacaaatgaccaaaat 308  Q
       |||| ||| |||  ||||||||||||||    
T  16670298 tgtttaccctttctcctcaaatgaccaaaat 16670268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 334
Target Start/End: Original strand, 12789054 - 12789258
Alignment:
Q  133 cttaattataaatagttactacacgcttaactcttaaaacatctcataatt--accatctcaaaatatttaccactagttacttctaacttagtaaaaac 230  Q
    ||||||| |||| ||||||||||| |||||   |||||||| |||||  ||  |||| ||||||||| |||| |||||||||||||||||||||||||      
T  12789054 cttaattctaaaaagttactacacacttaatctttaaaacacctcattgttttaccacctcaaaataattacaactagttacttctaacttagtaaaat- 12789152  T
Q  231 aaccattcacgctaaaacactaaaataattcttattctaaaatt-actaaattactcttactcaacaaatgaccaaaatac--ttagtcctgaaaatgac 327  Q
    ||| || | | |||||| | |||||||||    ||||||||||| ||||| |||  | | |||| ||||||||||||||||  ||||| || ||||||||    
T  12789153 aactatcctcactaaaataataaaataatctccattctaaaatttactaatttatccgtgctcaccaaatgaccaaaatacctttagt-cttaaaatgac 12789251  T
Q  328 taaaata 334  Q
    |||||||    
T  12789252 taaaata 12789258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 17380143 - 17380196
Alignment:
Q  66 taaccctaatttcctctcatgagttaactatatatactctaataatgggttagg 119  Q
    ||||| |||||||||||||| ||||| |||||||||||| |||||| |||||||    
T  17380143 taaccataatttcctctcataagttatctatatatactccaataattggttagg 17380196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 20394322 - 20394417
Alignment:
Q  133 cttaattataaatagttactacacgcttaactcttaaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaa 228  Q
    ||||||| |||| ||||||||| | |||||||||||||| || ||||| ||||| || ||||||| |||||    |||||| | ||||||||||||    
T  20394322 cttaattctaaaaagttactactcacttaactcttaaaagatatcatatttaccgtcccaaaataattaccttaggttactacaaacttagtaaaa 20394417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 39665578 - 39665514
Alignment:
Q  40 ttgtgaaatgtgtgaatgaatgagtgtaaccctaatttcctctcatgagttaactatatatactc 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||||    
T  39665578 ttgtgaaatgtgtgaatgaatgagtataaccctaatttcctctcatgagttacgtatatacactc 39665514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 39665424 - 39665345
Alignment:
Q  168 aaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaa 247  Q
    |||||||||||| |||||| |||||||||| |||||||  |||||| |||||||||| |||| ||| |||||| ||||||    
T  39665424 aaaacatctcattattaccgtctcaaaataattaccacaggttactgctaacttagtgaaaataactattcacactaaaa 39665345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 23282386 - 23282454
Alignment:
Q  269 aaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatacc 336  Q
    |||||||||||  ||| |||||||  |||||||||||||||  ||||||||| |||||||||||||||||    
T  23282386 aaaattactaacatacccttactcgccaaatgaccaaaatacccttagtcct-aaaatgactaaaatacc 23282454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 24690100 - 24690059
Alignment:
Q  269 aaaattactaaattactcttactcaacaaatgaccaaaatac 310  Q
    ||||||||||| |||||||| |||| ||||||||||||||||    
T  24690100 aaaattactaatttactcttgctcatcaaatgaccaaaatac 24690059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 24699451 - 24699410
Alignment:
Q  269 aaaattactaaattactcttactcaacaaatgaccaaaatac 310  Q
    ||||||||||| |||||||| |||| ||||||||||||||||    
T  24699451 aaaattactaatttactcttgctcatcaaatgaccaaaatac 24699410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 5136 - 5300
Alignment:
Q  122 aactcttacttcttaattataaatagttactacacgcttaactctt--aaaacatctcataa-ttaccatctcaaaatatttaccactagttacttctaa 218  Q
    |||||||||  ||||||| |||| ||||||||||| |||||||| |  ||||||||  |||| ||||||  |||||||| ||||| | ||||||| ||||    
T  5136 aactcttaccacttaattctaaaaagttactacacacttaactcattaaaaacatcgtataaattaccacttcaaaataattaccgcaagttactactaa 5235  T
Q  219 cttagtaaaaacaaccattcacgctaaaacactaaaataattct-tattctaaaattactaaattac 284  Q
    ||||||||||| ||||| |||| || |||||||||||| |||||  |||||||||||||||| ||||    
T  5236 cttagtaaaaataaccaatcacact-aaacactaaaat-attctacattctaaaattactaatttac 5300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 32534 - 32416
Alignment:
Q  193 aaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactc 292  Q
    ||||| ||||||| ||||||| ||||||||||||||| ||| ||||||   ||||||||||||||||  | ||||||| ||||||||| ||| ||||||     
T  32534 aaataattaccacaagttactactaacttagtaaaaataactattcacttcaaaacactaaaataatcttaattctaagattactaaaatacccttactt 32435  T
Q  293 aacaaatgaccaaaatact 311  Q
    ||| | | |||||||||||    
T  32434 aacgatttaccaaaatact 32416  T

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Target: scaffold0599 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 8570 - 8447
Alignment:
Q  135 taattataaatagttactacacgcttaactcttaaaacatctcataatt--accatctcaaaata-tttaccactagttacttctaacttagtaaaaaca 231  Q
    ||||| |||| || |||||||| |||||||| | ||||||||||| |||  |||||||||||||| |||| ||||||||||| ||| ||||||||||| |    
T  8570 taattctaaaaagctactacacacttaactcattaaacatctcattattttaccatctcaaaataatttatcactagttactactagcttagtaaaaata 8471  T
Q  232 accattcacgctaaaacactaaaa 255  Q
    |  |||| | ||||||||||||||    
T  8470 attattctcactaaaacactaaaa 8447  T

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Target: scaffold0086 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 336
Target Start/End: Complemental strand, 9320 - 9186
Alignment:
Q  203 cactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgac 302  Q
    ||||| |||| |||| ||||||||||| ||| ||||||   ||||||||||||||||  | | ||||| ||||||||| ||| |||||| ||||||||||    
T  9320 cactaattacctctatcttagtaaaaataactattcacttcaaaacactaaaataatcttaactctaagattactaaaatacccttacttaacaaatgac 9221  T
Q  303 caaaata--cttagtcctgaaaatgactaaaatacc 336  Q
    |||||||   ||||| || |||||||||||||||||    
T  9220 caaaatatctttagt-cttaaaatgactaaaatacc 9186  T

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Target: scaffold0064 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 334
Target Start/End: Complemental strand, 5961 - 5766
Alignment:
Q  141 taaatagttactacacgcttaactcttaaaacatctcataatt--accatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattc 238  Q
    |||| |||| |||||| ||||| ||| |||||||||||| |||  |||||||||||||| ||||||||| ||||| ||||||||||||||  ||| ||||    
T  5961 taaaaagttgctacacacttaattct-aaaacatctcattattttaccatctcaaaataattaccactaattactactaacttagtaaaat-aactattc 5864  T
Q  239 acgctaaaacactaaaataattcttattctaaaattactaaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaata 334  Q
     | |||||||| ||||| |||    | ||||| ||||  || |||| ||||||||| || |||||||||||  |||| || | |||||||||||||||    
T  5863 tcactaaaacaataaaacaatatccactctaacattataaatttacccttactcaataattgaccaaaatacccttaatcttaaaaatgactaaaata 5766  T

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Target: scaffold0064; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 6059 - 6001
Alignment:
Q  67 aaccctaatttcctctcatgagttaactatatata-ctctaataatgggttagggtaact 125  Q
    |||| |||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||    
T  6059 aaccataatttcctctcatgagttatctatttatagctc-aataatgggttagggtaact 6001  T

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Target: scaffold0496 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 11061 - 11221
Alignment:
Q  179 taattaccatctcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaa-cactaaaataattctta-ttctaaaattac 276  Q
    |||||||||| |||||||| |||||   |||||| |||  ||||||||||| ||  |||||| |||||| ||| |||||| |||||  ||||||||||||    
T  11061 taattaccatatcaaaataattaccgtaagttacctctttcttagtaaaaataattattcactctaaaaacaccaaaata-ttcttccttctaaaattac 11159  T
Q  277 taaattactcttactcaacaaatgaccaaaata--cttagtcctgaaaatgactaaaatacc 336  Q
    ||  |||||||  |||  |||||||||||||||  |||| |||| |||||||||||||||||    
T  11160 tagtttactctcgctcctcaaatgaccaaaatacccttaatcctaaaaatgactaaaatacc 11221  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 14036 - 14128
Alignment:
Q  135 taattataaatagttactacacgcttaactct-taaaacatctcataattaccatctcaaaatatttaccactagttacttctaacttagtaa 226  Q
    ||||| |||| ||||||||||| |||||| |  || |||||||| || ||||||  |||||||| ||||||||||||||| ||||||||||||    
T  14036 taattctaaaaagttactacacacttaacacgctataacatctcttatttaccacatcaaaataattaccactagttactactaacttagtaa 14128  T

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Target: scaffold0613 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 336
Target Start/End: Complemental strand, 1932 - 1784
Alignment:
Q  190 tcaaaatatttaccactagttacttctaacttagtaaaaacaaccattcacgctaaaacactaaaataattcttattctaaaattactaaattactctta 289  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||| || | |   |||| |||||||||||    ||||||| || | |||| ||| |||     
T  1932 tcaaaataattaccactagttactactaacttagtaaaaataactatccccctcaaaatactaaaataatctcaattctaagataaataaaatacccttc 1833  T
Q  290 ctcaacaaatgaccaaaatac--ttagtcctgaaaatgactaaaatacc 336  Q
    |||  ||||| ||||||||||  |||||||| ||||| | |||||||||    
T  1832 ctcctcaaattaccaaaatactattagtcctaaaaataattaaaatacc 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 25094594 - 25094636
Alignment:
Q  270 aaattactaaattactcttactcaacaaatgaccaaaatactt 312  Q
    ||||||||||||||| ||||||||  |||||||||||||||||    
T  25094594 aaattactaaattacccttactcataaaatgaccaaaatactt 25094636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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