View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_34 (Length: 367)
Name: NF0688_low_34
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 22 - 355
Target Start/End: Original strand, 5888731 - 5889064
Alignment:
| Q |
22 |
catcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacacagaagctttactatgtttagattt |
121 |
Q |
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| T |
5888731 |
catcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacgcagaagctttactatgtttagattt |
5888830 |
T |
|
| Q |
122 |
aagatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgtttaagttccctctcccaattgagagaatcttgatctcttgcc |
221 |
Q |
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| T |
5888831 |
aagatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgttttagttccctctcccaattgagagaatcttgatctcttgcc |
5888930 |
T |
|
| Q |
222 |
atgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaa |
321 |
Q |
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| T |
5888931 |
atgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaa |
5889030 |
T |
|
| Q |
322 |
ctgtcttttctacttgcttcgatgcagcaacagc |
355 |
Q |
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| T |
5889031 |
ccgtcttttctacttgcttcgatgcagcaacagc |
5889064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 346
Target Start/End: Complemental strand, 46806149 - 46805827
Alignment:
| Q |
24 |
tcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacacagaagctt-tactatgtttagattta |
122 |
Q |
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|||||||| |||||||| ||| |||||||||||||||| || |||| | ||||||||||||||| ||||| |||| ||| | | | |||||||||| |
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| T |
46806149 |
tcatcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttcca-gtttagatttg |
46806051 |
T |
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| Q |
123 |
agatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgtttaagttccctctcccaattgagagaatcttgatctcttgcca |
222 |
Q |
| |
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|||||| | ||| |||| |||| | ||||| | | | || |||| |||| | |||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
46806050 |
agatcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgcca |
46805951 |
T |
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| Q |
223 |
tgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaac |
322 |
Q |
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|||||||||||||||| ||||| |||||||||| ||||||| ||| || | || || |||||||||||||| || | |||||||| |||||||| || |
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| T |
46805950 |
tgactgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccac |
46805851 |
T |
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| Q |
323 |
tgtcttttctacttgcttcgatgc |
346 |
Q |
| |
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|| ||| ||||||| ||| ||||| |
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| T |
46805850 |
tgacttctctacttccttggatgc |
46805827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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