View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_38 (Length: 344)
Name: NF0688_low_38
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 12844295 - 12844459
Alignment:
| Q |
38 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatt |
137 |
Q |
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| T |
12844295 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacag-tttttttatt |
12844393 |
T |
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| Q |
138 |
taatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatga |
203 |
Q |
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| T |
12844394 |
taatttatattaaaatgtaaaataaagtcgcatttacttttaatattggggtttaattgtctatga |
12844459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 12861222 - 12861058
Alignment:
| Q |
38 |
acggttagcgcaatttggaatttcccgcgccaggattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatt |
137 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
12861222 |
acggttagagcaatttggaatttcccgcgccaggatttatttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagttttttttatt |
12861123 |
T |
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| Q |
138 |
taatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861122 |
taatttatattaaaatgtaaaataaagttgcatttacttttaatattggggtttaattatctatg |
12861058 |
T |
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