View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_39 (Length: 344)
Name: NF0688_low_39
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 338
Target Start/End: Original strand, 27656125 - 27656433
Alignment:
| Q |
30 |
gtggagatacaattgagaatgagagagacataaggaccacactagagggagagtcagttcagcaagtaccaaaggagcaagaggttaagcacnnnnnnng |
129 |
Q |
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| T |
27656125 |
gtggagatacaattgagaatgagagagacataaggaccacactagagggagagtcagttcagcaagtaccaaaggagcaagagattaagcacaaaaaaag |
27656224 |
T |
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| Q |
130 |
tagggttgcaactcttgatgcatttaggggcctcacaatcgtggttagtacatacttttctaagatacttttaacgctatcaataaatcataacaaatca |
229 |
Q |
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| T |
27656225 |
tagggttgcaactcttgatgcatttaggggcctcacaatcgtggttagtacatacttttctaagatgcttttaacgctatcaataaatcataacaaatca |
27656324 |
T |
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| Q |
230 |
catgtgtaactttagaaatagtcgtaatgataataaaatatttttaattatctgacaatcgatattaattgacgatctaaaaatatttacagttgatgat |
329 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27656325 |
tatgtgtaactttagaagtagtcataatgaaaataaaatatttttaattatctgacaatcgatattaattgacgatctaacaatatttacagttgatgat |
27656424 |
T |
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| Q |
330 |
attgttgga |
338 |
Q |
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|||| |||| |
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| T |
27656425 |
attggtgga |
27656433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 41310359 - 41310313
Alignment:
| Q |
132 |
gggttgcaactcttgatgcatttaggggcctcacaatcgtggttagt |
178 |
Q |
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| T |
41310359 |
gggttgcaacacttgatgcatttaggggcctcaccattgtggttagt |
41310313 |
T |
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