View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0688_low_42 (Length: 320)

Name: NF0688_low_42
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0688_low_42
NF0688_low_42
[»] chr5 (11 HSPs)
chr5 (1-291)||(39460985-39461275)
chr5 (1-264)||(39487200-39487460)
chr5 (5-264)||(39451739-39451995)
chr5 (1-267)||(39463732-39463995)
chr5 (1-267)||(39455362-39455626)
chr5 (1-273)||(39469929-39470197)
chr5 (1-273)||(39457464-39457733)
chr5 (2-114)||(39476248-39476360)
chr5 (2-264)||(39483999-39484258)
chr5 (1-264)||(39472765-39473025)
chr5 (5-267)||(43311705-43311964)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 39460985 - 39461275
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39460985 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgcc 39461084  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39461085 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaattgg 39461184  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagactctaatattggcccaccc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39461185 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagactcaaatattggcccaccc 39461275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 39487200 - 39487460
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  |||||  | ||||||||||||||| |||| ||||| |||||||||    
T  39487200 caagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgct 39487299  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
    |||||| || |||| | || |||  | |||||||| |||||||||  |||||||||  |   ||||||| |||||||||||||| ||||| ||||  |||    
T  39487300 attgagaattgtggagcccgttttgtgtggtctctgcgtaaaccctcaccgaagggaat---catggtttcaccctctgattaccctctttctgatttgg 39487396  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggc 264  Q
      | ||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||||||||    
T  39487397 aatcggttttacctgaaggattcttagatcgaacaacagggattggaagggtaattggatgggc 39487460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 39451739 - 39451995
Alignment:
Q  5 tggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgctattg 104  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||  ||||||   ||||||||||| ||| ||||||||||||||||||||||||    
T  39451739 tggcttgatgatcaacctctttcttctgttgttttcctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattg 39451838  T
Q  105 aggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgggctt 204  Q
    || ||||||| | ||| ||| |||||||||| ||||||||   ||| |||||   |||||||| |||||| ||||||||| ||||| ||||  || | |     
T  39451839 agaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaaggg---cgccatggctgcaccttctgattacactctttctgatctgtgttc 39451935  T
Q  205 ggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggc 264  Q
    ||||||||| ||||| ||||||||||| || | || |||||||||||| ||||| |||||    
T  39451936 ggttttaccagaaggattcttagatcgaacggaagagattggaagggtgattggttgggc 39451995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39463995 - 39463732
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  || ||| | |||||||| |||||| |||||||||| |||| ||||    
T  39463995 caagtggcttgatgatcaacctccttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgct 39463896  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
    |||||| ||||||| |  |  ||  | |||||||| |||||||||  ||| |||||   ||||||| |||| || ||||||||| ||||| ||||  | |    
T  39463895 attgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaaggg---cgccatgattgcgccatctgattaccctctttctgatttag 39463799  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctcc 267  Q
    | |  |||||||||||||| |||||| ||||||| | || |||||||||||| ||||| ||||||||    
T  39463798 gttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattggttgggctcc 39463732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39455362 - 39455626
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| || |  |  |||   || |||||||||||| ||||||||||||||  ||||    
T  39455362 caagtggcttgatgatcaacctctttcctccgtcgttttcctttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgct 39455461  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
    |||||| |||||     ||| |||||||||||||| ||||||||   |||||||||   ||||| || |||||| ||||||||| ||||| ||||  ||     
T  39455462 attgagaatagtaagtcccacttcatatggtctctccgtaaacctgtaccgaagggg--cgccagggctgcaccttctgattacactctttctgatttgt 39455559  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctcc 267  Q
    | | | ||||||||||||| ||||||||||| || |||| |||||||||||| ||||| ||||||||    
T  39455560 gttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattggttgggctcc 39455626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39470197 - 39469929
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||| ||||  |||| |   ||||||||||||||| |||||| |||||||| ||||    
T  39470197 caagtggcttgatgatcagcctccttcctcggtagttttcctctgcttcgggagcagggtttt-ttcgatgaggatcaggttaaggggatcgcacttgct 39470099  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
     | ||| ||| ||| |||| | |  | |||||||| ||||||||   ||| |||||   | |||||||||| || ||||||||| ||||| ||||  ||     
T  39470098 gtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaaggg---caccatggttgcgccatctgattaccctctttctgatttga 39470002  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagac 273  Q
    | | ||||||||| ||||| ||||||||| |||||| || |||||||||||| |||||||||||||| |||||    
T  39470001 gttcggttttaccagaaggattcttagataggacagaagagattggaagggttattggatgggctccacagac 39469929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39457733 - 39457464
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||  |||||    ||||||||||||||| ||||||||||||| | ||||    
T  39457733 caagtggcttgatgatcaacctccttcctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgcccttgct 39457634  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
     | ||| ||| ||| ||||  ||  | |||||||| ||||||||   |||||||   | | |||||  ||| || ||||||||| ||||| ||||  ||     
T  39457633 gtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaag---gacaccatgaatgcgccatctgattacactctttctgatttga 39457537  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagac 273  Q
    | | ||||||||| ||||| ||||||||| ||||||||| |||||||||||| ||||||||||| || |||||    
T  39457536 gttcggttttaccagaaggattcttagataggacagcagagattggaagggttattggatgggccccacagac 39457464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 39476248 - 39476360
Alignment:
Q  2 aagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgcta 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||   || ||||| |||||| ||||||||||||||||||||     
T  39476248 aagtggcttgatgatcaacctccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctg 39476347  T
Q  102 ttgaggatagtgg 114  Q
    ||||| |||||||    
T  39476348 ttgagaatagtgg 39476360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 39483999 - 39484258
Alignment:
Q  2 aagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgcta 101  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||   || ||||| |||||| |||||||||||||||||| |     
T  39483999 aagtggcttcataatcaacctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgttg 39484098  T
Q  102 ttgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtggg 201  Q
    ||||| ||||||| |  |  ||| | |||||||| ||||||||   |   |||||   | |||||| ||||||||||||||||||||||  |||  ||||    
T  39484099 ttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctctagtaaaggg---caccatggctgcaccctctgattactctctttatgatttggg 39484195  T
Q  202 cttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggc 264  Q
       ||||||||| ||||| ||||||||||| || || | |||||||||| | ||| |||||||    
T  39484196 tccggttttacctgaaggattcttagatcgaactgccgagattggaaggataattagatgggc 39484258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 39472765 - 39473025
Alignment:
Q  1 caagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgct 100  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||||| || | || |||| | ||||| ||||||||| ||| | |||| |||   |||    
T  39472765 caagtggcttgatgatcaacctgcatcctcagtagttttcctctgcttcggaagtatgggttctttcgacgaggatcaggttacgcagattgcatgcgct 39472864  T
Q  101 attgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgg 200  Q
    |||||| ||||||| | ||  |||||||||||||||||||||||   |||| ||||   | ||||||   | |||||||||||| |||||  |||  |||    
T  39472865 attgagaatagtggggcccggttcatatggtctcttcgtaaacctccaccggaggg---caccatggcctcgccctctgattaccctctttttgatttgg 39472961  T
Q  201 gcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggc 264  Q
    | |    |||||||||||| || ||||| |||||||||| ||||||||||||  ||||||||||    
T  39472962 gttcaagtttacccgaaggatttttagagcggacagcagagattggaagggttgttggatgggc 39473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 43311964 - 43311705
Alignment:
Q  5 tggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgctattg 104  Q
    ||||| ||||| ||||||||||| ||||||||||  || ||||||||||  | |||| | |||||||||||||| |||| |||||| ||  |||||||||    
T  43311964 tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg 43311865  T
Q  105 aggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcaccctctgattactctcttactgaagtgggctt 204  Q
    || | ||||  |  |  ||| | |||||||| || ||||||  |||||||||     |||||| ||   | ||||||||||||||| ||||  ||| |      
T  43311864 agaaaagtgaggctcgcttcctgtggtctctgcgaaaacccccaccgaagggaa---ccatgggtgagacatctgattactctctttctgatttggtcgc 43311768  T
Q  205 ggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctcc 267  Q
     |||||||| ||||||||||||||||| |||||  ||| ||||||||||||||||||||||||    
T  43311767 agttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcc 43311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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