View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0688_low_44 (Length: 319)
Name: NF0688_low_44
Description: NF0688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0688_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 97 - 306
Target Start/End: Complemental strand, 16645312 - 16645094
Alignment:
| Q |
97 |
aggtcttaatcttgatttaagttcttcaatatcctaacatagaggctaaaataaatgatggataatcataggcaaacacttgggaattttgcaatggtag |
196 |
Q |
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| T |
16645312 |
aggtcttaatcttgatttaagttcttcaatatcctaacatagaggctaaaaaaaatgatggataatcataggcaaacacttgggaattttgcaatggtag |
16645213 |
T |
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| Q |
197 |
cattactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagca |
287 |
Q |
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| T |
16645212 |
cattactctttcttggttttattttcatttaccattggtctttcatatatttctccacccaattacttctatttcaacatgaaccactctgccagcagca |
16645113 |
T |
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| Q |
288 |
atcaaacaaggtaccttca |
306 |
Q |
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||||||||||||||||||| |
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| T |
16645112 |
atcaaacaaggtaccttca |
16645094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 1520961 - 1520745
Alignment:
| Q |
104 |
aatcttgatttaagttcttcaatatcctaacatagaggctaaaataaa-----tgatggataatcataggcaaacacttgggaattttgcaatggtagca |
198 |
Q |
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| T |
1520961 |
aatcttgatttaatttgtacaatatcctaacatagaggtaaagaaaaaaataatgatggataatcttaggcaaacccttgggagttttgcaatggtagca |
1520862 |
T |
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| Q |
199 |
ttactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagcaat |
289 |
Q |
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| T |
1520861 |
ttactctttattggttttattttcctttaccattggtctttctcatctttctccacccaattacttctatctcacaatgaaccactctgccagcagcaat |
1520762 |
T |
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| Q |
290 |
caaacaaggtaccttca |
306 |
Q |
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|||||| ||||| |||| |
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| T |
1520761 |
caaacatggtactttca |
1520745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 1516776 - 1516559
Alignment:
| Q |
104 |
aatcttgatttaagttcttcaatatcctaa-catagaggctaaaata-----aatgatggataatcataggcaaacacttgggaattttgcaatggtagc |
197 |
Q |
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||||||||||||| || ||||||||||||| |||||||| || ||| ||||||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
1516776 |
aatcttgatttaatttgttcaatatcctaaacatagaggtaaatatagaattaatgatggatagtcttaggcaaacacttgggagttttgcaatggtagc |
1516677 |
T |
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| Q |
198 |
attactctttcttggttttattttcatt---------tctttcatatatttctccacccaattacttctatttcaacatgaaccactctaccagcagcaa |
288 |
Q |
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|||||||||| || ||||||||||| || || ||| || ||||||||||||||||||||||| ||| ||| |||||||| |||||||||| |
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| T |
1516676 |
attactctttgttagttttattttcctttaccattggtcattcccatctttctccacccaattacttctatctcacaatggaccactctgccagcagcaa |
1516577 |
T |
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| Q |
289 |
tcaaacaaggtaccttca |
306 |
Q |
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||||||| ||||| |||| |
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| T |
1516576 |
tcaaacatggtacgttca |
1516559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 23087298 - 23087344
Alignment:
| Q |
176 |
ttgggaattttgcaatggtagcattactctttcttggttttattttc |
222 |
Q |
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||||| ||||||||||||||||||| |||||| ||||||||||||| |
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| T |
23087298 |
ttgggtattttgcaatggtagcattgctctttggtggttttattttc |
23087344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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